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Research Article

What species make up the Nike fish assemblages at the macrotidal estuary in Gorontalo Bay, Indonesia?

[version 1; peer review: 2 approved with reservations]
PUBLISHED 18 Sep 2019
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Abstract

Background: No study has documented the species composition of Nike fish (fam: Gobiidae) schools. The aim of this study is to document the species composition of the Nike-fish schooling.
Methods: All samples were collected randomly from fisher’s catch during the fishing season on 5th–11th October 2018 at macrotidal area in Leato. Then, all specimens were identified morphologically by melanophore pattern differences. Subsequently, all identified-samples by melanophores pattern differences were sent to the genetic laboratory for identification.
Results: The morphological results show there are five individuals with a different melanophores pattern. On the contrary, the genetic results only show four species from those five individuals. They are Sicyopterus pugnans, S. cynocephalus, Belobranchus segura, and Bunaka gyrinoides.
Conclusions: Our findings show that there are only four species that compose the Nike fish schooling in Gorontao Bay. They are Sicyopterus pugnans, Sicyopterus cynocephalus, Belobranchus segura, and Bunaka gyrinoides.

Keywords

Nike-fish, Gorontalo, melanophores pattern, genetic, morphology

Introduction

Estuaries are a crucial habitat for biota and small fish, in particular juveniles of commercially relevant species. They are considered as the most productive and dynamic ecosystem in the world (Cantera & Blanco, 2001; Lahjie et al., 2019; McHugh, 1967; Sreekanth et al., 2017). They also perform the most crucial role in the population dynamic for a lot of invertebrate and fish species. These ecosystems also significantly contribute to provide some ecological services such as nursery ground, feeding ground and breeding habitats for both freshwater and marine species (Beck et al., 2001; McLusky & Elliott, 2004; Sun et al., 2019). The most well-known species that occupy the seas and estuary area in Gorontalo Bay is Nike fish.

Nike (pronounced nee-K) is a local name for transparent juvenile of unknown fish. These fish are approximately 2–4 cm in length; they appear seasonally and fished at estuary waters around the Gorontalo Bay. These juvenile fish has been fished and marketed traditionally for a long time. They are preferable for consumption by the local people than other fisheries products. As a consequence, fishing activity has increased over time to supply local demand for Nike (Wolok et al., 2019).

However, the impact of fishing activities is unknown. A recent paper concerning Nike only reports the seasonal appearance during the fishing season (Pasisingi & Abdullah, 2018), total length and morphometric measurements (Zakaria, 2018), nutrition content (Liputo et al., 2013), and mercury contamination of these fish (Salam et al., 2016). To our knowledge, no studies have documented the species diversity that composed the schooling of Nike. Although, Yamasaki et al. (2011) have reported that species in juvenile form can be determined by its melanophores pattern and genetic determination.

The objective of the present study is to address this lack of knowledge by identifying the fish species that composed a Nike fish schooling. This information is very urgent and required for fisheries management. Therefore, we aimed to identify the species that composed the schooling of Nike fish in Gorontalo Bay by melanophores pattern and genetic identification.

Methods

This study was conducted in October 2018 at Leato (0°30’0.58”N, 123°3’55.42”E), Gorontalo Bay, Indonesia (Figure 2). Approximately 100 g of the Nike-Fish Assemblages (Figure 1) were collected randomly from the fishermen’s catch at fishing grounds during the catch-season (on October 5th–11th). All samples were transported using a cool-box to the lab for measurement. Immediately after collection, all samples were identified visually according to Yamasaki et al. (2011). and the specimens with different melanophore patterns were separated according to their melanophore display. We assummed that those separated individuals were diferent on species.

782389f3-de63-4e53-a240-6a6c175d2599_figure1.gif

Figure 1. Nike fish assemblages.

782389f3-de63-4e53-a240-6a6c175d2599_figure2.gif

Figure 2. Study site.

The red dot indicates the position of fishing ground where the samples were collected from fishermen.

Then, we selected one individual from each group and labeled these as N1, N2, N3, N4, N5, for genetic identification. Images of the selected samples were captured using Canon EOS 100d with 58 mm pro Digital Wide Converter 0.45X Lens and subsequently converted to black and white using CorelDraw Graphic Suite 2019.

After selection, all of the individuals with different melanophores were preserved with ethanol 70% in a separate bottle and sent to the Genetics Laboratory at Manokwari for genetic identification by Sanger sequencing. The DNA cytochrome oxidase subunit I (CO1) of the sample was isolated with a Geneaid™ DNA Isolation Kit. Editing, and proofreadingof seqeunces,, and construction of the the phylogenetic tree was generated with MEGA 5.0 software.

Results

Five unspecified individuals of Nike-fish were identified morphologically by melanophore differences, as shown in Figure 3. N1 was revealed as Sicyopterus pugnans; N2 as Sicyopterus cynocephalus; N3 and N5 as Belobranchus segura; and N4 as Bunaka gyrinoides. The specimens with melanophores differences of each group is shown in Figure 4.

782389f3-de63-4e53-a240-6a6c175d2599_figure3.gif

Figure 3. Nike fish with different melanophore patterns.

782389f3-de63-4e53-a240-6a6c175d2599_figure4.gif

Figure 4. Phylogenetic tree of individuals with different melanophore patterns.

Melanophores pattern

Nike-fish schools consist of various species with the same body-shape, but different melanophore displays. Moreover, from 100 g (~145 individuals) of the total specimens that we identified, only five individuals with different melanophore patterns were identified (Figure 3).

Genetic identification

Figure 3 shows the genetic identification among the individuals (species). The outcomes of genetic identification for N3 and N5 shows that both samples are the same species: Belobranchus segura.

Discussion

Although the melanophore patterns in N3 and N5 are different, their genetics are identical, meaning they are the same species (Belobranchus segura). This dissimilarity might be affected by the changes of melanophore during the development of the larvae. Valade et al. (2009) report that such melanophores chang on Sicyopterus langocephalus during the larvae stage. These changes could represent a problem for morphological identification. We can not count the species by morphological differences. Therefore, for the next examination we strongly recommended determining the species composition of the Nike fish schools by genetic rather than morphological identification because for that reason.

Conclusion

Our findings show that there are four species that compose Nike fish schooling. They are Sicyopterus pugnans, Sicyopterus cynocephalus, Belobranchus segura, and Bunaka gyrinoides.

Data availability

Underlying data

Group N1, Sicyopterus pugnans isolate N1_LEATO_1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial. GenBank accession number MN065178.

Group N2, Sicyopterus cynocephalus isolate N2_LEATO_1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial. GenBank accession number MN069305.

Group N3, Belobranchus segura isolate N3_LEATO_1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial. GenBank accession number MN069306.

Group N4, Bunaka gyrinoides isolate N4_LEATO_1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial. GenBank accession number MN069307.

Group N5, Belobranchus segura isolate N5_LEATO_1 cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial. GenBank accession number MN069308.

Comments on this article Comments (5)

Version 1
VERSION 1 PUBLISHED 18 Sep 2019
  • Reader Comment 03 Jul 2020
    Rahmi Ami, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    This journal is very helpful. I can improve my knowledge about nike fish. thank you!
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    jonathan prasetya, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    Thank you for posting this journal, this journal is gonna help many people
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    Nabila N, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    this journal has increased my knowledge, thank you!
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    pita zara, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    Thank you so much. This journal is very interesting and also very helpful to me.
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    tesya Tesa, Reader, Indonesia
    03 Jul 2020
    Reader Comment
    selama ini pemahaman masyarakat ikan nike hanya merupakan ikan satu jenis saja. Dan jurnal ini sangat membantu masyarakat untuk bisa tahu lebih dalam tentang ikan nike
    Competing Interests: No competing interests were disclosed.
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Sahami FM, Kepel RC, Olii AH and Pratasik SB. What species make up the Nike fish assemblages at the macrotidal estuary in Gorontalo Bay, Indonesia? [version 1; peer review: 2 approved with reservations] F1000Research 2019, 8:1654 (https://doi.org/10.12688/f1000research.19501.1)
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Open Peer Review

Current Reviewer Status: ?
Key to Reviewer Statuses VIEW
ApprovedThe paper is scientifically sound in its current form and only minor, if any, improvements are suggested
Approved with reservations A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit.
Not approvedFundamental flaws in the paper seriously undermine the findings and conclusions
Version 1
VERSION 1
PUBLISHED 18 Sep 2019
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Reviewer Report 23 Oct 2019
Ken Maeda, Okinawa Institute of Science and Technology Graduate University (OIST), Onna, Japan 
Approved with Reservations
VIEWS 17
If the nike-fish material was composed of Sicyopterus, Bunaka, and Belobranchus species, the larvae must represent different shapes, for example, standard length, head length, preanal length, length of caudal peduncle, fin-ray counts (especially second dorsal, anal and pectoral fins), and ... Continue reading
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CITE
HOW TO CITE THIS REPORT
Maeda K. Reviewer Report For: What species make up the Nike fish assemblages at the macrotidal estuary in Gorontalo Bay, Indonesia? [version 1; peer review: 2 approved with reservations]. F1000Research 2019, 8:1654 (https://doi.org/10.5256/f1000research.21381.r54104)
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.
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Reviewer Report 17 Oct 2019
Dini Wahyu Kartika Sari, Department of Fisheries, Faculty of Agriculture, Gadjah Mada University, Yogyakarta, Indonesia 
Approved with Reservations
VIEWS 18
Methods:
  1. Do not show clearly how many samples of the Nike either for morphological analysis or molecular analysis.
     
  2. No information about the size of the Nike.
     
  3. What
... Continue reading
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CITE
HOW TO CITE THIS REPORT
Sari DWK. Reviewer Report For: What species make up the Nike fish assemblages at the macrotidal estuary in Gorontalo Bay, Indonesia? [version 1; peer review: 2 approved with reservations]. F1000Research 2019, 8:1654 (https://doi.org/10.5256/f1000research.21381.r54101)
NOTE: it is important to ensure the information in square brackets after the title is included in all citations of this article.

Comments on this article Comments (5)

Version 1
VERSION 1 PUBLISHED 18 Sep 2019
  • Reader Comment 03 Jul 2020
    Rahmi Ami, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    This journal is very helpful. I can improve my knowledge about nike fish. thank you!
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    jonathan prasetya, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    Thank you for posting this journal, this journal is gonna help many people
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    Nabila N, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    this journal has increased my knowledge, thank you!
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    pita zara, Reader, Gorontalo, Indonesia
    03 Jul 2020
    Reader Comment
    Thank you so much. This journal is very interesting and also very helpful to me.
    Competing Interests: No competing interests were disclosed.
  • Reader Comment 03 Jul 2020
    tesya Tesa, Reader, Indonesia
    03 Jul 2020
    Reader Comment
    selama ini pemahaman masyarakat ikan nike hanya merupakan ikan satu jenis saja. Dan jurnal ini sangat membantu masyarakat untuk bisa tahu lebih dalam tentang ikan nike
    Competing Interests: No competing interests were disclosed.
Alongside their report, reviewers assign a status to the article:
Approved - the paper is scientifically sound in its current form and only minor, if any, improvements are suggested
Approved with reservations - A number of small changes, sometimes more significant revisions are required to address specific details and improve the papers academic merit.
Not approved - fundamental flaws in the paper seriously undermine the findings and conclusions
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