#Organism/Name Kingdom Group SubGroup Plasmid Name RefSeq INSDC Size (Kb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene

'Brassica napus' phytoplasma Bacteria Terrabacteria group Tenericutes pPABN1 NC_016583.1 HQ637382 3.529 23.9445 5 - - - 5 -

'Nostoc azollae' 0708 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pAzo01 NC_014249.1 CP002060 109.57 35.6786 46 - - - 93 47

'Nostoc azollae' 0708 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pAzo02 NC_014250.1 CP002061 21.875 33.5406 8 - - - 9 1

'Rehmannia glutinosa' phytoplasma Bacteria Terrabacteria group Tenericutes pPARG1 NC_014123.1 FJ905104 4.371 24.5482 7 - - - 7 -

[Bacillus thuringiensis] serovar konkukian str. 97-27 Bacteria Terrabacteria group Firmicutes pBT9727 NC_006578.1 CP000047 77.112 32.6408 80 - - - 80 -

[Clostridium] acidurici 9a Bacteria Terrabacteria group Firmicutes pCuri3 NC_018657.1 CP003327 2.913 28.8019 3 - - - 3 -

[Clostridium] sordellii JGS6382 Bacteria Terrabacteria group Firmicutes pCS1 - LN681235.1 106.013 25.3356 94 - - - 94 -

[Clostridium] sordellii ATCC9714 Bacteria Terrabacteria group Firmicutes pCS1 - LN679999.1 103.77 25.0342 88 - - - 89 1

[Clostridium] sordellii ATCC9714 Bacteria Terrabacteria group Firmicutes pCS2 - LN680000.1 37.131 26.0456 52 - - - 52 -

[Eubacterium] eligens ATCC 27750 Bacteria Terrabacteria group Firmicutes unnamed NC_012780.1 CP001106 626.744 36.7801 595 - - - 610 15

[Eubacterium] eligens ATCC 27750 Bacteria Terrabacteria group Firmicutes unnamed NC_012782.1 CP001105 60.455 40.751 84 - - - 86 2

[Haemophilus] ducreyi ATCC 27722 Bacteria Proteobacteria Gammaproteobacteria pNAD1 NC_005329.1 AY434675 5.568 34.0697 8 - - - 10 2

[Haemophilus] parasuis HS016 Bacteria Proteobacteria Gammaproteobacteria pTetHS016 NC_022367.1 KC818265 3.366 36.7796 2 - - - 2 -

[Haemophilus] parasuis YC0093 Bacteria Proteobacteria Gammaproteobacteria pYC93 NC_019214.1 HM486907 4.237 48.0765 5 - - - 5 -

[Haemophilus] parasuis HN7061 Bacteria Proteobacteria Gammaproteobacteria pHN61 NC_012661.1 FJ947048 6.32 36.1392 5 - - - 5 -

[Haemophilus] parasuis Bacteria Proteobacteria Gammaproteobacteria pHS-Rec NC_006829.1 AY862436 9.462 32.7838 7 - - - 7 -

[Haemophilus] parasuis QY431 Bacteria Proteobacteria Gammaproteobacteria pQY431 NC_021186.1 KC405065 7.777 33.882 6 - - - 6 -

[Haemophilus] parasuis HS1543 Bacteria Proteobacteria Gammaproteobacteria pHS-Tet NC_006828.1 AY862435 5.147 41.3445 4 - - - 4 -

[Haemophilus] parasuis FS39 Bacteria Proteobacteria Gammaproteobacteria pFS39 NC_021185.1 KC405064 7.577 35.555 6 - - - 6 -

[Haemophilus] parasuis FZ0751 Bacteria Proteobacteria Gammaproteobacteria pFZ51 NC_019361.1 JN202624 15.672 41.3859 16 - - - 16 -

[Pasteurella] aerogenes Bacteria Proteobacteria Gammaproteobacteria pB1002 NC_020885.1 JQ773456 5.668 41.4432 4 - - - 4 -

[Pasteurella] aerogenes Bacteria Proteobacteria Gammaproteobacteria pB1000 NC_020886.1 JQ773457 4.613 41.4914 4 - - - 4 -

[Pasteurella] aerogenes Bacteria Proteobacteria Gammaproteobacteria pCCK343 NC_019255.1 FR687372 5.415 43.8042 5 - - - 5 -

[Pasteurella] aerogenes BB1084 Bacteria Proteobacteria Gammaproteobacteria pIG1 NC_019979.1 JQ319769 5.36 47.5 5 - - - 5 -

[Pseudomonas syringae] pv. tomato str. DC3000 Bacteria Proteobacteria Gammaproteobacteria pDC3000B NC_004632.1 AE016854 67.473 56.1662 70 - - - 77 -

[Pseudomonas syringae] pv. tomato str. DC3000 Bacteria Proteobacteria Gammaproteobacteria pDC3000A NC_004633.1 AE016855 73.661 55.1459 68 - - - 73 -

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB4 NC_009929.1 CP000841 226.68 45.877 205 - - - 219 14

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB5 NC_009930.1 CP000842 177.162 44.6755 168 - - - 171 3

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB1 NC_009926.1 CP000838 374.161 47.3483 292 - - - 313 21

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB8 NC_009933.1 CP000845 120.693 45.4185 100 - - - 102 2

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB2 NC_009927.1 CP000839 356.087 45.3367 312 - - - 331 19

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB9 NC_009934.1 CP000846 2.133 42.5223 1 - - - 2 1

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB6 NC_009931.1 CP000843 172.728 47.1267 141 - - - 157 16

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB7 NC_009932.1 CP000844 155.11 45.5909 124 - - - 129 5

Acaryochloris marina MBIC11017 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pREB3 NC_009928.1 CP000840 273.121 45.1902 245 - - - 275 30

Acetobacter aceti Bacteria Proteobacteria Alphaproteobacteria pAC5 NC_001275.1 AF110140 5.123 55.8657 2 - - - 2 -

Acetobacter aceti CCM 3610 Bacteria Proteobacteria Alphaproteobacteria pAG20 NC_022074.1 KC871566 2.953 56.3495 1 - - - 1 -

Acetobacter ghanensis LMG 23848T Bacteria Proteobacteria Alphaproteobacteria 1P NZ_LN609303.1 LN609303 161.207 55.7259 160 - - - 168 8

Acetobacter ghanensis LMG 23848T Bacteria Proteobacteria Alphaproteobacteria 2P NZ_LN609304.1 LN609304 17.845 53.5444 20 - - - 21 1

Acetobacter pasteurianus Bacteria Proteobacteria Alphaproteobacteria pAP12875 NC_004991.1 U20550 1.44 57.4306 2 - - - 2 -

Acetobacter pasteurianus CCM 2374 Bacteria Proteobacteria Alphaproteobacteria pAP2 NC_007293.1 AM055747 4.484 51.1597 1 - - - 1 -

Acetobacter pasteurianus AC2-58 Bacteria Proteobacteria Alphaproteobacteria pAC258-26 NC_019327.1 JQ418524 20.898 51.8853 32 - - - 32 -

Acetobacter pasteurianus CCM 3610 Bacteria Proteobacteria Alphaproteobacteria pGR7 NC_010177.2 AM922326 2.446 29.5585 3 - - - 3 -

Acetobacter pasteurianus AC2-58 Bacteria Proteobacteria Alphaproteobacteria pAC258-29 NC_019337.1 JQ418523 30.498 50.7115 42 - - - 42 -

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp2 NZ_HF677572.1 HF677572 18.169 55.5672 25 - - - 25 -

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp6 NC_021978.1 HF677576 6.548 51.7868 8 - - - 9 1

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp3 NC_021992.1 HF677573 15.601 55.4708 14 - - - 16 2

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp5 NC_021993.1 HF677575 9.914 50.7464 9 - - - 11 2

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp4 NC_021977.1 HF677574 11.105 52.2828 12 - - - 14 2

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp7 NC_021979.1 HF677577 3.851 47.0267 2 - - - 2 -

Acetobacter pasteurianus 386B Bacteria Proteobacteria Alphaproteobacteria Apa386Bp1 NC_021976.1 HF677571 194.78 52.0094 183 - - - 196 13

Acetobacter pasteurianus IFO 3283-01 Bacteria Proteobacteria Alphaproteobacteria pAPA01-050 NC_013214.1 AP011126 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-01 Bacteria Proteobacteria Alphaproteobacteria pAPA01-040 NC_013213.1 AP011125 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-01 Bacteria Proteobacteria Alphaproteobacteria pAPA01-030 NC_013212.1 AP011124 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-01 Bacteria Proteobacteria Alphaproteobacteria pAPA01-011 NC_013210.1 AP011122 191.799 53.3621 170 - - - 183 13

Acetobacter pasteurianus IFO 3283-01 Bacteria Proteobacteria Alphaproteobacteria pAPA01-020 NC_013211.1 AP011123 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-01 Bacteria Proteobacteria Alphaproteobacteria pAPA01-060 NC_013215.1 AP011127 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-01-42C Bacteria Proteobacteria Alphaproteobacteria pAPA42C_050 NC_017107.1 AP011168 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-01-42C Bacteria Proteobacteria Alphaproteobacteria pAPA42C_011 NC_017104.1 AP011164 191.799 53.3621 171 - - - 183 12

Acetobacter pasteurianus IFO 3283-01-42C Bacteria Proteobacteria Alphaproteobacteria pAPA42C_040 NC_017106.1 AP011167 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-01-42C Bacteria Proteobacteria Alphaproteobacteria pAPA42C_020 NC_017105.1 AP011165 182.94 53.4968 163 - - - 173 10

Acetobacter pasteurianus IFO 3283-01-42C Bacteria Proteobacteria Alphaproteobacteria pAPA42C_060 NC_017152.1 AP011169 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-01-42C Bacteria Proteobacteria Alphaproteobacteria pAPA42C_030 NC_017151.1 AP011166 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-03 Bacteria Proteobacteria Alphaproteobacteria pAPA03-040 NC_017142.1 AP011132 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-03 Bacteria Proteobacteria Alphaproteobacteria pAPA03-050 NC_017120.1 AP011133 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-03 Bacteria Proteobacteria Alphaproteobacteria pAPA03-010 NC_017101.1 AP011129 191.427 53.366 171 - - - 182 11

Acetobacter pasteurianus IFO 3283-03 Bacteria Proteobacteria Alphaproteobacteria pAPA03-020 NC_017118.1 AP011130 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-03 Bacteria Proteobacteria Alphaproteobacteria pAPA03-030 NC_017119.1 AP011131 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-03 Bacteria Proteobacteria Alphaproteobacteria pAPA03-060 NC_017109.1 AP011134 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-07 Bacteria Proteobacteria Alphaproteobacteria pAPA07-040 NC_017123.1 AP011139 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-07 Bacteria Proteobacteria Alphaproteobacteria pAPA07-020 NC_017122.1 AP011137 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-07 Bacteria Proteobacteria Alphaproteobacteria pAPA07-060 NC_017124.1 AP011141 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-07 Bacteria Proteobacteria Alphaproteobacteria pAPA07-010 NC_017143.1 AP011136 191.427 53.366 171 - - - 182 11

Acetobacter pasteurianus IFO 3283-07 Bacteria Proteobacteria Alphaproteobacteria pAPA07-030 NC_017110.1 AP011138 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-07 Bacteria Proteobacteria Alphaproteobacteria pAPA07-050 NC_017144.1 AP011140 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-12 Bacteria Proteobacteria Alphaproteobacteria pAPA12-060 NC_017137.1 AP011176 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-12 Bacteria Proteobacteria Alphaproteobacteria pAPA12-030 NC_017114.1 AP011173 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-12 Bacteria Proteobacteria Alphaproteobacteria pAPA12-050 NC_017116.1 AP011175 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-12 Bacteria Proteobacteria Alphaproteobacteria pAPA12-014 NC_017136.1 AP011171 191.411 53.3663 170 - - - 181 11

Acetobacter pasteurianus IFO 3283-12 Bacteria Proteobacteria Alphaproteobacteria pAPA12-040 NC_017115.1 AP011174 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-12 Bacteria Proteobacteria Alphaproteobacteria pAPA12-020 NC_017113.1 AP011172 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-22 Bacteria Proteobacteria Alphaproteobacteria pAPA22-030 NC_017127.1 AP011145 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-22 Bacteria Proteobacteria Alphaproteobacteria pAPA22-020 NC_017126.1 AP011144 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-22 Bacteria Proteobacteria Alphaproteobacteria pAPA22-050 NC_017128.1 AP011147 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-22 Bacteria Proteobacteria Alphaproteobacteria pAPA22-010 NC_017117.1 AP011143 191.427 53.366 170 - - - 181 11

Acetobacter pasteurianus IFO 3283-22 Bacteria Proteobacteria Alphaproteobacteria pAPA22-060 NC_017129.1 AP011148 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-22 Bacteria Proteobacteria Alphaproteobacteria pAPA22-040 NC_017145.1 AP011146 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-26 Bacteria Proteobacteria Alphaproteobacteria pAPA26-020 NC_017131.1 AP011151 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-26 Bacteria Proteobacteria Alphaproteobacteria pAPA26-030 NC_017147.1 AP011152 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-26 Bacteria Proteobacteria Alphaproteobacteria pAPA26-040 NC_017132.1 AP011153 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-26 Bacteria Proteobacteria Alphaproteobacteria pAPA26-050 NC_017148.1 AP011154 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-26 Bacteria Proteobacteria Alphaproteobacteria pAPA26-013 NC_017130.1 AP011150 191.419 53.3662 170 - - - 181 11

Acetobacter pasteurianus IFO 3283-26 Bacteria Proteobacteria Alphaproteobacteria pAPA26-060 NC_017133.1 AP011155 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus IFO 3283-32 Bacteria Proteobacteria Alphaproteobacteria pAPA32-012 NC_017134.1 AP011157 191.443 53.3658 171 - - - 183 12

Acetobacter pasteurianus IFO 3283-32 Bacteria Proteobacteria Alphaproteobacteria pAPA32-030 NC_017135.1 AP011159 49.961 53.882 58 - - - 59 1

Acetobacter pasteurianus IFO 3283-32 Bacteria Proteobacteria Alphaproteobacteria pAPA32-020 NC_017149.1 AP011158 182.94 53.4968 162 - - - 173 11

Acetobacter pasteurianus IFO 3283-32 Bacteria Proteobacteria Alphaproteobacteria pAPA32-040 NC_017102.1 AP011160 3.204 53.7453 4 - - - 4 -

Acetobacter pasteurianus IFO 3283-32 Bacteria Proteobacteria Alphaproteobacteria pAPA32-050 NC_017103.1 AP011161 3.035 55.7825 3 - - - 3 -

Acetobacter pasteurianus IFO 3283-32 Bacteria Proteobacteria Alphaproteobacteria pAPA32-060 NC_017112.1 AP011162 1.815 58.5675 1 - - - 1 -

Acetobacter pasteurianus NBRC 101655 Bacteria Proteobacteria Alphaproteobacteria plasmid3 NZ_AP014884.1 AP014884 2.799 58.1994 4 - - - 4 -

Acetobacter pasteurianus NBRC 101655 Bacteria Proteobacteria Alphaproteobacteria plasmid4 NZ_AP014885.1 AP014885 2.278 55.7068 2 - - - 2 -

Acetobacter pasteurianus NBRC 101655 Bacteria Proteobacteria Alphaproteobacteria plasmid1 NZ_AP014882.1 AP014882 187.193 52.0228 173 - - - 182 9

Acetobacter pasteurianus NBRC 101655 Bacteria Proteobacteria Alphaproteobacteria plasmid2 NZ_AP014883.1 AP014883 6.331 52.8826 9 - - - 9 -

Acetobacter senegalensis 108B Bacteria Proteobacteria Alphaproteobacteria 1P NZ_LN606601.1 LN606601 80.028 0 91 - - - 95 4

Achromobacter denitrificans EST4002 Bacteria Proteobacteria Betaproteobacteria pEST4011 NC_005793.2 AY540995 76.958 62.026 60 - - - 61 -

Achromobacter denitrificans AX-22 Bacteria Proteobacteria Betaproteobacteria pAX22 NC_022242.1 HF679279 28.466 62.2532 33 - - - 33 -

Achromobacter xylosoxidans A8 Bacteria Proteobacteria Betaproteobacteria pA81 NC_006830.1 AJ515144 98.192 62.1772 100 - - - 103 3

Achromobacter xylosoxidans FDAARGOS_147 Bacteria Proteobacteria Betaproteobacteria unnamed NZ_CP014059.1 CP014059 21.968 65.0765 25 - - - 26 1

Achromobacter xylosoxidans FDAARGOS_162 Bacteria Proteobacteria Betaproteobacteria unnamed - CP014066.1 18.395 64.1533 15 - - - 21 6

Achromobacter xylosoxidans A8 Bacteria Proteobacteria Betaproteobacteria pA82 NC_014642.1 CP002289 247.895 61.3082 234 - - - 237 3

Achromobacter xylosoxidans A8 Bacteria Proteobacteria Betaproteobacteria pA81 NC_014641.1 CP002288 98.156 62.1684 92 - - - 99 7

Acidianus ambivalens Lei 10 Archaea TACK group Crenarchaeota pDL10 NC_005562.1 AJ225333 7.598 37.9705 10 - - - 20 -

Acidianus hospitalis W1 Archaea TACK group Crenarchaeota pAH1 NC_011299.1 EU881703 28.649 35.921 39 - - - 39 -

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY06 NC_009472.1 CP000694 8.781 60.9953 6 - - - 6 -

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY07 NC_009473.1 CP000695 5.629 57.5058 6 - - - 6 -

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY05 NC_009471.1 CP000693 37.155 60.8532 25 - - - 28 3

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY02 NC_009468.1 CP000690 187.422 61.9196 159 - - - 169 10

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY04 NC_009470.1 CP000692 37.415 59.6205 30 - - - 30 -

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY03 NC_009469.1 CP000691 88.953 62.1283 71 - - - 73 2

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY01 NC_009467.1 CP000689 203.589 62.3334 146 - - - 168 22

Acidiphilium cryptum JF-5 Bacteria Proteobacteria Alphaproteobacteria pACRY08 NC_009474.1 CP000696 4.909 58.6881 5 - - - 5 -

Acidiphilium multivorum JCM8867 Bacteria Proteobacteria Alphaproteobacteria pAM5 NC_008691.1 DQ499634 5.161 57.547 5 - - - 5 -

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV8 NC_015182.1 AP012043 1.729 60.9023 2 - - - 2 -

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV5 NC_015180.1 AP012040 14.328 58.9475 13 - - - 13 -

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV3 NC_015179.1 AP012038 54.248 61.2078 50 - - - 55 5

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV2 NC_015187.1 AP012037 65.564 61.9212 54 - - - 58 4

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV7 NC_015189.1 AP012042 5.178 57.5898 5 - - - 6 1

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV4 NC_015188.1 AP012039 40.588 60.0473 32 - - - 33 1

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV1 NC_015178.1 AP012036 271.573 62.94 230 - - - 246 16

Acidiphilium multivorum AIU301 Bacteria Proteobacteria Alphaproteobacteria pACMV6 NC_015181.1 AP012041 12.125 59.5794 12 - - - 12 -

Acidithiobacillus caldus MNG Bacteria Proteobacteria Acidithiobacillia pTcM1 NC_010600.1 EU421841 65.158 57.1242 45 - - - 45 -

Acidithiobacillus caldus F Bacteria Proteobacteria Acidithiobacillia pTC-F14 NC_004734.1 AF325537 14.155 55.733 16 - - - 16 -

Acidithiobacillus caldus ATCC 51756 Bacteria Proteobacteria Acidithiobacillia pACA1.1 NZ_CP005988.1 CP005988 27.536 59.3659 29 - - - 29 -

Acidithiobacillus caldus ATCC 51756 Bacteria Proteobacteria Acidithiobacillia megaplasmid mpAca1.1 NZ_CP005987.1 CP005987 171.972 57.3646 162 - - - 175 13

Acidithiobacillus caldus ATCC 51756 Bacteria Proteobacteria Acidithiobacillia pACA1.2 NZ_CP005989.1 CP005989 9.82 50.3055 6 - - - 7 1

Acidithiobacillus caldus SM-1 Bacteria Proteobacteria Acidithiobacillia pLAtc1 NC_015852.1 CP002575 9.778 59.8384 12 - - - 12 -

Acidithiobacillus caldus SM-1 Bacteria Proteobacteria Acidithiobacillia pLAtc2 NC_015853.1 CP002576 14.11 57.7108 14 - - - 14 -

Acidithiobacillus caldus SM-1 Bacteria Proteobacteria Acidithiobacillia megaplasmid NC_015851.1 CP002574 251.782 57.2042 221 - - - 236 15

Acidithiobacillus caldus SM-1 Bacteria Proteobacteria Acidithiobacillia pLAtc3 NC_015854.1 CP002577 29.704 58.8305 30 - - - 30 -

Acidithiobacillus ferrooxidans ATCC 33020 Bacteria Proteobacteria Acidithiobacillia pTF5 NC_005023.1 U73041 19.792 56.1287 13 - - - 15 2

Acidithiobacillus ferrooxidans MAL4-1 Bacteria Proteobacteria Acidithiobacillia pTF4.1 NC_001520.1 X96982 4.104 62.2076 2 - - - 2 -

Acidovorax avenae 83 Bacteria Proteobacteria Betaproteobacteria pAAA83 NC_024998.1 AB852526 59.534 64.4993 64 - - - 64 -

Acidovorax sp. JS42 Bacteria Proteobacteria Betaproteobacteria pAOVO02 NC_008766.1 CP000541 63.609 64.5836 63 - - - 66 3

Acidovorax sp. JS42 Bacteria Proteobacteria Betaproteobacteria pAOVO01 NC_008765.1 CP000540 72.689 62.2061 83 - - - 86 3

Acinetobacter baumannii 6200 Bacteria Proteobacteria Gammaproteobacteria p6200-47.274kb NZ_CP010399.1 CP010399 47.274 40.8258 55 - - - 55 -

Acinetobacter baumannii 6200 Bacteria Proteobacteria Gammaproteobacteria p6200-9.327kb NZ_CP010400.1 CP010400 9.327 34.2447 11 - - - 11 -

Acinetobacter baumannii 6200 Bacteria Proteobacteria Gammaproteobacteria p6200-114.848kb NZ_CP010398.1 CP010398 114.848 41.6934 121 - 1 - 124 2

Acinetobacter baumannii CS01 Bacteria Proteobacteria Gammaproteobacteria IV NZ_HG977525.1 HG977525 8.174 34.5363 8 - - - 8 -

Acinetobacter baumannii CS01 Bacteria Proteobacteria Gammaproteobacteria III NZ_HG977524.1 HG977524 64.165 33.3671 50 - - - 81 31

Acinetobacter baumannii CS01 Bacteria Proteobacteria Gammaproteobacteria II NZ_HG977523.1 HG977523 63.72 33.4181 70 - - - 88 18

Acinetobacter baumannii CR17 Bacteria Proteobacteria Gammaproteobacteria III NZ_HG977528.1 HG977528 64.479 33.476 49 - - - 78 29

Acinetobacter baumannii CR17 Bacteria Proteobacteria Gammaproteobacteria IV NZ_HG977529.1 HG977529 8.047 34.4103 7 - - - 7 -

Acinetobacter baumannii CR17 Bacteria Proteobacteria Gammaproteobacteria II NZ_HG977527.1 HG977527 63.795 33.4148 72 - - - 87 15

Acinetobacter baumannii IOMTU433 Bacteria Proteobacteria Gammaproteobacteria pIOMTU433 NZ_AP014650.1 AP014650 189.354 39.5286 195 - - - 201 6

Acinetobacter baumannii Bacteria Proteobacteria Gammaproteobacteria pA1-1 NZ_CP010782.1 CP010782 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii AB5075-UW Bacteria Proteobacteria Gammaproteobacteria p1AB5075 NZ_CP008707.1 CP008707 83.61 36.9717 110 - - - 112 2

Acinetobacter baumannii AB5075-UW Bacteria Proteobacteria Gammaproteobacteria p2AB5075 NZ_CP008708.1 CP008708 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii AB5075-UW Bacteria Proteobacteria Gammaproteobacteria p3AB5075 NZ_CP008709.1 CP008709 1.967 39.1459 3 - - - 3 -

Acinetobacter baumannii XH386 Bacteria Proteobacteria Gammaproteobacteria pAB386 NZ_CP010780.1 CP010780 112.157 41.5498 117 - 1 - 122 4

Acinetobacter baumannii Ab04-mff Bacteria Proteobacteria Gammaproteobacteria pAB04-2 NZ_CP012008.1 CP012008 87.569 34.0223 111 - - - 112 1

Acinetobacter baumannii Ab04-mff Bacteria Proteobacteria Gammaproteobacteria pAB04-1 NZ_CP012007.1 CP012007 169.023 39.5544 178 - - - 185 7

Acinetobacter baumannii ATCC 17978-mff Bacteria Proteobacteria Gammaproteobacteria pAB3 NZ_CP012005.1 CP012005 148.955 37.4784 157 - - - 158 1

Acinetobacter baumannii B8300 Bacteria Proteobacteria Gammaproteobacteria pCMC8300 NZ_CM003361.1 CM003361 25.15 35.336 30 - - - 30 -

Acinetobacter baumannii D36 Bacteria Proteobacteria Gammaproteobacteria pRAY* NC_025068.1 - 6.078 39.2563 8 - - - 8 -

Acinetobacter baumannii GF216 Bacteria Proteobacteria Gammaproteobacteria pNDM-AB NC_020818.1 KC503911 47.098 38.042 43 - - - 43 -

Acinetobacter baumannii DS002 Bacteria Proteobacteria Gammaproteobacteria pTS236 NC_016977.1 JN872565 2.252 41.4298 3 - - - 3 -

Acinetobacter baumannii Bacteria Proteobacteria Gammaproteobacteria pMMCU3 NC_019199.1 GQ904227 8.964 34.4935 11 - - - 11 -

Acinetobacter baumannii E7 Bacteria Proteobacteria Gammaproteobacteria pRAY*-v2 NC_019345.1 JX076770 8.433 39.1083 7 - - - 9 -

Acinetobacter baumannii A85 Bacteria Proteobacteria Gammaproteobacteria pA85-2 NC_025108.1 KJ477078 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii CU2 Bacteria Proteobacteria Gammaproteobacteria pMMCU2 NC_013506.1 GQ476987 10.27 36.1928 7 - - - 7 -

Acinetobacter baumannii A85 Bacteria Proteobacteria Gammaproteobacteria pA85-1 NC_025107.1 KJ461963 2.726 37.7476 5 - - - 5 -

Acinetobacter baumannii transconjugant 1 Bacteria Proteobacteria Gammaproteobacteria pABIR NC_010481.1 EU294228 29.823 36.7971 26 - - - 29 3

Acinetobacter baumannii C2 Bacteria Proteobacteria Gammaproteobacteria pRAY*-v1 NC_019311.1 JF343536 6.078 39.1741 6 - - - 6 -

Acinetobacter baumannii Bacteria Proteobacteria Gammaproteobacteria pMMD NC_019280.1 GQ904226 9.964 34.7049 8 - - - 8 -

Acinetobacter baumannii G7 Bacteria Proteobacteria Gammaproteobacteria pAB-G7-1 NC_025110.1 KJ586856 8.731 34.3832 9 - - - 9 -

Acinetobacter baumannii A85 Bacteria Proteobacteria Gammaproteobacteria pA85-3 NC_025109.1 KJ493819 86.335 33.8982 87 - - - 87 -

Acinetobacter baumannii VA-566/00 Bacteria Proteobacteria Gammaproteobacteria pABVA01 NC_012813.1 FM210331 8.963 34.4639 8 - - - 8 -

Acinetobacter baumannii K60 Bacteria Proteobacteria Gammaproteobacteria pAB120 NC_019359.1 JX069966 10.879 34.4609 13 - - - 13 -

Acinetobacter baumannii NCGM 253 Bacteria Proteobacteria Gammaproteobacteria pAB-NCGM253 NC_021489.1 AB823544 8.97 34.437 10 - - - 10 -

Acinetobacter baumannii 19606 Bacteria Proteobacteria Gammaproteobacteria pMAC NC_006877.1 AY541809 9.54 34.6751 11 - - - 11 -

Acinetobacter baumannii Bacteria Proteobacteria Gammaproteobacteria pMMA2 NC_013277.1 GQ377752 10.679 34.8066 9 - - - 9 -

Acinetobacter baumannii 107m Bacteria Proteobacteria Gammaproteobacteria ABIBUN107mP1 NC_022565.1 - 8.731 34.3718 11 - - - 11 -

Acinetobacter baumannii G7 Bacteria Proteobacteria Gammaproteobacteria pAb-G7-2 NC_025104.1 KF669606 70.1 33.4836 68 - - - 68 -

Acinetobacter baumannii D72 Bacteria Proteobacteria Gammaproteobacteria pD72-2 NC_025111.1 KM051846 70.102 33.4798 68 - - - 68 -

Acinetobacter baumannii ATCC 329 Bacteria Proteobacteria Gammaproteobacteria AbATCC329 NC_025168.1 KJ534569 8.842 34.5397 10 - - - 10 -

Acinetobacter baumannii D36 Bacteria Proteobacteria Gammaproteobacteria pD36-1 NZ_CP012953.1 CP012953 4.754 39.167 4 - - - 4 -

Acinetobacter baumannii D36 Bacteria Proteobacteria Gammaproteobacteria pD36-3 NZ_CP012955.1 CP012955 9.276 35.608 11 - - - 11 -

Acinetobacter baumannii D36 Bacteria Proteobacteria Gammaproteobacteria pRAY* (pD36-2) NZ_CP012954.1 CP012954 6.078 39.2563 6 - - - 6 -

Acinetobacter baumannii D36 Bacteria Proteobacteria Gammaproteobacteria pD36-4 NZ_CP012956.1 CP012956 47.457 41.427 57 - - - 61 4

Acinetobacter baumannii Bacteria Proteobacteria Gammaproteobacteria II NZ_LN865144.1 LN865144 7.742 37.5614 12 - - - 12 -

Acinetobacter baumannii KBN10P02143 Bacteria Proteobacteria Gammaproteobacteria pKBN10P02143 NZ_CP013925.1 CP013925 52.517 36.4206 62 - - - 62 -

Acinetobacter baumannii Bacteria Proteobacteria Gammaproteobacteria II NZ_LN997847.1 LN997847 7.742 37.5614 12 - - - 12 -

Acinetobacter baumannii R612 Bacteria Proteobacteria Gammaproteobacteria unnamed2 NZ_CP014217.1 CP014217 5.465 35.0412 6 - - - 7 1

Acinetobacter baumannii R612 Bacteria Proteobacteria Gammaproteobacteria unnamed1 NZ_CP014216.1 CP014216 74.241 33.5165 99 - - - 100 1

Acinetobacter baumannii MEX11594 Bacteria Proteobacteria Gammaproteobacteria unnamed 1 NZ_CM003741.1 CM003741 5.557 34.8749 6 - - - 6 -

Acinetobacter baumannii MEX11594 Bacteria Proteobacteria Gammaproteobacteria unnamed 2 NZ_CM003742.1 CM003742 4.437 33.3559 5 - - - 5 -

Acinetobacter baumannii 1656-2 Bacteria Proteobacteria Gammaproteobacteria ABKp1 NC_017163.1 CP001922 74.451 33.4663 98 - - - 98 -

Acinetobacter baumannii 1656-2 Bacteria Proteobacteria Gammaproteobacteria ABKp2 NC_017164.1 CP001923 8.041 33.5033 7 - - - 8 1

Acinetobacter baumannii 3909 Bacteria Proteobacteria Gammaproteobacteria p1ABST78 NZ_AEOZ01000236.1 AEOZ01000236 26.411 37.2648 31 - - - 32 1

Acinetobacter baumannii 3990 Bacteria Proteobacteria Gammaproteobacteria p2ABST2 NZ_AEOY01000096.1 AEOY01000096 21.846 37.2746 27 - - - 28 1

Acinetobacter baumannii 3990 Bacteria Proteobacteria Gammaproteobacteria p1ABST2 NZ_AEOY01000095.1 AEOY01000095 63.32 33.4713 79 - - - 83 4

Acinetobacter baumannii 4190 Bacteria Proteobacteria Gammaproteobacteria p2ABST25 - AEPA01000396.1 8.97 34.359 - - - - - -

Acinetobacter baumannii 4190 Bacteria Proteobacteria Gammaproteobacteria p1ABST25 - AEPA01000395.1 15.267 35.5276 - - - - - -

Acinetobacter baumannii AB0057 Bacteria Proteobacteria Gammaproteobacteria pAB0057 NC_011585.1 CP001183 8.729 34.3797 9 - - - 9 -

Acinetobacter baumannii AB5075 Bacteria Proteobacteria Gammaproteobacteria pAB5075 NZ_JHUI01000005.1 JHUI01000005 8.819 34.2442 9 - - - 9 -

Acinetobacter baumannii AC12 Bacteria Proteobacteria Gammaproteobacteria pAC12 - CP007550.1 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii AC30 Bacteria Proteobacteria Gammaproteobacteria pAC30a - CP007578.1 8.685 34.3466 9 - - - 9 -

Acinetobacter baumannii AC30 Bacteria Proteobacteria Gammaproteobacteria pAC30b - CP007579.1 16.236 45.1712 15 - - - 15 -

Acinetobacter baumannii AC30 Bacteria Proteobacteria Gammaproteobacteria pAC30c - CP007580.1 71.433 33.7183 99 - - - 99 -

Acinetobacter baumannii ACICU Bacteria Proteobacteria Gammaproteobacteria pACICU2 NC_010606.1 CP000865 64.366 33.4012 69 - - - 87 18

Acinetobacter baumannii ACICU Bacteria Proteobacteria Gammaproteobacteria pACICU1 NC_010605.1 CP000864 28.279 37.8443 31 - - - 36 5

Acinetobacter baumannii ATCC 17978 Bacteria Proteobacteria Gammaproteobacteria pAB1 - CP000522.1 13.408 36.165 11 - - - 11 -

Acinetobacter baumannii ATCC 17978 Bacteria Proteobacteria Gammaproteobacteria pAB2 - CP000523.1 11.302 35.1796 5 - - - 5 -

Acinetobacter baumannii AYE Bacteria Proteobacteria Gammaproteobacteria p4ABAYE NC_010403.1 CU459139 2.726 37.6009 5 - - - 5 -

Acinetobacter baumannii AYE Bacteria Proteobacteria Gammaproteobacteria p2ABAYE NC_010402.1 CU459138 9.661 34.396 9 - - - 9 -

Acinetobacter baumannii AYE Bacteria Proteobacteria Gammaproteobacteria p3ABAYE NC_010404.1 CU459140 94.413 37.4842 82 - - - 89 7

Acinetobacter baumannii AYE Bacteria Proteobacteria Gammaproteobacteria p1ABAYE NC_010401.1 CU459137 5.644 34.5145 7 - - - 7 -

Acinetobacter baumannii BJAB07104 Bacteria Proteobacteria Gammaproteobacteria p1BJAB07104 NC_021727.1 CP003887 70.17 33.8236 90 - - - 90 -

Acinetobacter baumannii BJAB07104 Bacteria Proteobacteria Gammaproteobacteria p2BJAB07104 NC_021728.1 CP003907 20.139 47.0679 19 - - - 22 3

Acinetobacter baumannii BJAB0715 Bacteria Proteobacteria Gammaproteobacteria pBJAB0715 NC_021734.1 CP003848 52.268 40.4263 48 - - - 52 4

Acinetobacter baumannii BJAB0868 Bacteria Proteobacteria Gammaproteobacteria p3BJAB0868 NC_021732.1 CP003908 20.139 47.0927 20 - - - 23 3

Acinetobacter baumannii BJAB0868 Bacteria Proteobacteria Gammaproteobacteria p2BJAB0868 NC_021731.1 CP003888 70.167 33.8279 89 - - - 90 1

Acinetobacter baumannii BJAB0868 Bacteria Proteobacteria Gammaproteobacteria p1BJAB0868 NC_021730.1 CP003850 8.721 34.3424 9 - - - 9 -

Acinetobacter baumannii Canada BC-5 Bacteria Proteobacteria Gammaproteobacteria pCanadaBC5-8.7 NZ_AFDN01000003.1 AFDN01000003 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii D1279779 Bacteria Proteobacteria Gammaproteobacteria pD1279779 NC_020525.1 CP003968 7.416 32.5917 10 - - - 10 -

Acinetobacter baumannii IS-123 Bacteria Proteobacteria Gammaproteobacteria pIS123-67 NZ_ALII01000020.1 ALII01000020 67.025 33.3831 85 - - - 90 5

Acinetobacter baumannii IS-123 Bacteria Proteobacteria Gammaproteobacteria pIS123-18 NZ_ALII01000019.1 ALII01000019 17.984 34.2026 19 - - - 19 -

Acinetobacter baumannii IS-123 Bacteria Proteobacteria Gammaproteobacteria pIS123-12 NZ_ALII01000018.1 ALII01000018 11.6 37.0431 13 - - - 14 1

Acinetobacter baumannii LAC-4 Bacteria Proteobacteria Gammaproteobacteria pABLAC2 NZ_CP007714.1 CP007714 6.076 39.2693 5 - - - 6 1

Acinetobacter baumannii LAC-4 Bacteria Proteobacteria Gammaproteobacteria pABLAC1 NZ_CP007713.1 CP007713 8.006 31.9885 8 - - - 8 -

Acinetobacter baumannii MDR-TJ Bacteria Proteobacteria Gammaproteobacteria pABTJ2 NC_020524.1 CP004359 110.967 41.6142 118 - 1 - 120 1

Acinetobacter baumannii MDR-TJ Bacteria Proteobacteria Gammaproteobacteria pABTJ1 NC_017848.1 CP003501 77.528 34.0458 96 - - - 100 4

Acinetobacter baumannii MDR-ZJ06 Bacteria Proteobacteria Gammaproteobacteria pMDR-ZJ06 NC_017172.1 CP001938 20.301 47.3868 21 - - - 24 3

Acinetobacter baumannii MRSN 3405 Bacteria Proteobacteria Gammaproteobacteria pMRSN3405-6 NZ_CM003320.1 CM003320 6.078 39.2563 6 - - - 6 -

Acinetobacter baumannii MRSN 3527 Bacteria Proteobacteria Gammaproteobacteria pMRSN3527-6 NZ_CM003318.1 CM003318 6.068 39.2716 5 - - - 6 1

Acinetobacter baumannii MRSN 3942 Bacteria Proteobacteria Gammaproteobacteria pMRSN3942-6 NZ_CM003319.1 CM003319 6.078 39.2563 6 - - - 6 -

Acinetobacter baumannii MRSN 4106 Bacteria Proteobacteria Gammaproteobacteria pMRSN4106-6 NZ_CM003315.1 CM003315 6.078 39.2563 6 - - - 6 -

Acinetobacter baumannii MRSN 58 Bacteria Proteobacteria Gammaproteobacteria pMRSN58-8.7 NZ_CM003317.1 CM003317 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii MRSN 58 Bacteria Proteobacteria Gammaproteobacteria pMRSN58-2.7 NZ_CM003316.1 CM003316 2.725 37.7982 4 - - - 4 -

Acinetobacter baumannii MRSN 7339 Bacteria Proteobacteria Gammaproteobacteria pMRSN7339-2.3 NZ_CM003313.1 CM003313 2.343 38.7537 2 - - - 2 -

Acinetobacter baumannii MRSN 7339 Bacteria Proteobacteria Gammaproteobacteria pMRSN7339-8.7 NZ_CM003314.1 CM003314 8.731 34.3718 9 - - - 9 -

Acinetobacter baumannii Naval-17 Bacteria Proteobacteria Gammaproteobacteria pNaval17-13 NZ_AFDO01000021.1 AFDO01000021 12.636 37.1478 13 - - - 14 1

Acinetobacter baumannii Naval-18 Bacteria Proteobacteria Gammaproteobacteria pNaval18-74 NZ_AFDA02000007.1 AFDA02000007 74.42 34.4504 84 - - - 97 13

Acinetobacter baumannii Naval-18 Bacteria Proteobacteria Gammaproteobacteria pNaval18-131 NZ_AFDA02000009.1 AFDA02000009 130.66 36.2904 125 - - - 146 21

Acinetobacter baumannii Naval-18 Bacteria Proteobacteria Gammaproteobacteria pNaval18-5.7 NZ_AFDA02000010.1 AFDA02000010 5.676 36.117 7 - - - 7 -

Acinetobacter baumannii Naval-18 Bacteria Proteobacteria Gammaproteobacteria pNaval18-8.4 NZ_AFDA02000008.1 AFDA02000008 8.422 36.7846 7 - - - 8 1

Acinetobacter baumannii Naval-18 Bacteria Proteobacteria Gammaproteobacteria pNaval18-6.1 NZ_AFDA02000006.1 AFDA02000006 6.078 39.2563 6 - - - 6 -

Acinetobacter baumannii Naval-18 Bacteria Proteobacteria Gammaproteobacteria pNaval18-7.0 NZ_AFDA02000011.1 AFDA02000011 7.032 35.4522 8 - - - 8 -

Acinetobacter baumannii Naval-81 Bacteria Proteobacteria Gammaproteobacteria pNaval81-67 NZ_AFDB02000004.1 AFDB02000004 67.012 33.3821 89 - - - 91 2

Acinetobacter baumannii Naval-81 Bacteria Proteobacteria Gammaproteobacteria pNaval81-13 NZ_AFDB02000005.1 AFDB02000005 12.634 37.1458 12 - - - 13 1

Acinetobacter baumannii Naval-81 Bacteria Proteobacteria Gammaproteobacteria pNaval81-26 NZ_AFDB02000003.1 AFDB02000003 26.089 34.0412 30 - - - 31 1

Acinetobacter baumannii OIFC032 Bacteria Proteobacteria Gammaproteobacteria pOIFC032-101 NZ_AFCZ02000003.1 AFCZ02000003 101.298 39.217 94 - 1 - 105 10

Acinetobacter baumannii OIFC032 Bacteria Proteobacteria Gammaproteobacteria pOIFC032-8.6 NZ_AFCZ02000004.1 AFCZ02000004 8.604 31.59 14 - - - 15 1

Acinetobacter baumannii OIFC109 Bacteria Proteobacteria Gammaproteobacteria pOIFC109-122 NZ_ALAL01000013.1 ALAL01000013 122.469 35.8336 131 - - - 134 3

Acinetobacter baumannii OIFC137 Bacteria Proteobacteria Gammaproteobacteria pOIFC137-122 NZ_AFDK01000004.1 AFDK01000004 122.461 35.8351 132 - - - 134 2

Acinetobacter baumannii OIFC143 Bacteria Proteobacteria Gammaproteobacteria pOIFC143-6.2 NZ_AFDL01000007.1 AFDL01000007 6.241 31.95 9 - - - 9 -

Acinetobacter baumannii OIFC143 Bacteria Proteobacteria Gammaproteobacteria pOIFC143-2.3 NZ_AFDL01000005.1 AFDL01000005 2.277 39.9209 1 - - - 1 -

Acinetobacter baumannii OIFC143 Bacteria Proteobacteria Gammaproteobacteria pOIFC143-128 NZ_AFDL01000008.1 AFDL01000008 127.633 36.2806 136 - - - 140 4

Acinetobacter baumannii OIFC143 Bacteria Proteobacteria Gammaproteobacteria pOIFC143-70 NZ_AFDL01000006.1 AFDL01000006 69.518 33.8732 91 - - - 93 2

Acinetobacter baumannii OIFC189 Bacteria Proteobacteria Gammaproteobacteria pOIFC189-111 NZ_AFDM01000010.1 AFDM01000010 110.967 41.6169 118 - 1 - 120 1

Acinetobacter baumannii PKAB07 Bacteria Proteobacteria Gammaproteobacteria pPKAB07 NZ_CP006964.1 CP006964 8.805 34.4009 10 - - - 10 -

Acinetobacter baumannii SDF Bacteria Proteobacteria Gammaproteobacteria p3ABSDF - CU468233.1 24.922 34.3953 24 - - - 26 2

Acinetobacter baumannii SDF Bacteria Proteobacteria Gammaproteobacteria p1ABSDF - CU468231.1 6.106 34.5398 8 - - - 8 -

Acinetobacter baumannii SDF Bacteria Proteobacteria Gammaproteobacteria p2ABSDF - CU468232.1 25.014 34.8925 30 - - - 32 2

Acinetobacter baumannii TCDC-AB0715 Bacteria Proteobacteria Gammaproteobacteria p2ABTCDC0715 - CP002524.1 70.894 33.3399 95 - - - 95 -

Acinetobacter baumannii TCDC-AB0715 Bacteria Proteobacteria Gammaproteobacteria p1ABTCDC0715 - CP002523.1 8.731 34.3718 10 - - - 10 -

Acinetobacter baumannii UH10707 Bacteria Proteobacteria Gammaproteobacteria pABUH5-114 NZ_AYOI01000002.1 AYOI01000002 114.115 42.791 132 - - - 133 1

Acinetobacter baumannii UH19608 Bacteria Proteobacteria Gammaproteobacteria pABUH3b-7.8 NZ_AYFZ01000083.1 AYFZ01000083 7.819 33.9685 10 - - - 10 -

Acinetobacter baumannii UH19608 Bacteria Proteobacteria Gammaproteobacteria pABUH2a-5.6 NZ_AYFZ01000080.1 AYFZ01000080 5.636 37.154 7 - - - 7 -

Acinetobacter baumannii UH2107 Bacteria Proteobacteria Gammaproteobacteria pABUH4-111 NZ_AYFW01000101.1 AYFW01000101 111.007 41.6163 118 - 1 - 120 1

Acinetobacter baumannii UH7007 Bacteria Proteobacteria Gammaproteobacteria pABUH6b-10 NZ_AYFI01000019.1 AYFI01000019 10.03 36.8993 11 - - - 11 -

Acinetobacter baumannii UH7607 Bacteria Proteobacteria Gammaproteobacteria pABUH2b-5.4 NZ_AYFH01000057.1 AYFH01000057 5.355 36.7507 7 - - - 7 -

Acinetobacter baumannii UH7607 Bacteria Proteobacteria Gammaproteobacteria pABUH3a-8.2 NZ_AYFH01000048.1 AYFH01000048 8.19 34.4567 10 - - - 10 -

Acinetobacter baumannii UH9707 Bacteria Proteobacteria Gammaproteobacteria pABUH6a-8.8 NZ_AYEX01000118.1 AYEX01000118 8.763 34.406 9 - - - 9 -

Acinetobacter baumannii UH9907 Bacteria Proteobacteria Gammaproteobacteria pABUH1-74 NZ_AYOH01000010.1 AYOH01000010 74.089 33.669 97 - - - 100 3

Acinetobacter baumannii ZW85-1 Bacteria Proteobacteria Gammaproteobacteria ZW85p2 NC_023031.1 CP006769 113.866 41.9019 118 - 1 - 124 5

Acinetobacter baumannii ZW85-1 Bacteria Proteobacteria Gammaproteobacteria pAbNDM-1 NC_019985.2 JN377410 48.368 40.748 55 - - - 56 1

Acinetobacter bereziniae CHI-40-1 Bacteria Proteobacteria Gammaproteobacteria pNDM-40-1 NC_023322.1 KF702385 45.826 40.0755 49 - - - 51 2

Acinetobacter bereziniae HPC229 Bacteria Proteobacteria Gammaproteobacteria pNDM229 NZ_KT072713.1 KT072713 44.56 40.8057 51 - - - 54 3

Acinetobacter calcoaceticus NDM-WS2 Bacteria Proteobacteria Gammaproteobacteria pNDM-WS2 NC_024959.1 KJ018153 13.94 46.4132 13 - - - 13 -

Acinetobacter calcoaceticus Acal H12O-07 Bacteria Proteobacteria Gammaproteobacteria pMMCU1 NC_013056.1 GQ342610 8.771 34.7623 6 - - - 6 -

Acinetobacter calcoaceticus subsp. anitratus XM1570 Bacteria Proteobacteria Gammaproteobacteria pXM2 NZ_CM001803.1 CM001803 93.891 37.6809 78 - - - 89 11

Acinetobacter calcoaceticus subsp. anitratus XM1570 Bacteria Proteobacteria Gammaproteobacteria pXM1 NZ_CM001802.1 CM001802 47.274 40.8279 55 - - - 55 -

Acinetobacter genomosp. NB14 JVAP01 Bacteria Proteobacteria Gammaproteobacteria pNDM-JVAP01 NZ_KM923969.1 KM923969 47.268 40.8331 55 - - - 55 -

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-5 NZ_CP010356.1 CP010356 13.94 36.9082 17 - - - 18 1

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-3 NZ_CP010354.1 CP010354 11.643 33.7628 11 - - - 13 2

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-6 NZ_CP010357.1 CP010357 13.33 36.3841 13 - - - 14 1

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-4 NZ_CP010355.1 CP010355 7.579 38.8838 8 - - - 9 1

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-1 NZ_CP010352.1 CP010352 3.978 35.0679 4 - - - 4 -

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-2 NZ_CP010353.1 CP010353 4.724 36.8755 7 - - - 7 -

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-9 NZ_CP010351.1 CP010351 398.857 39.9915 391 - - - 423 32

Acinetobacter johnsonii XBB1 Bacteria Proteobacteria Gammaproteobacteria pXBB1-8 NZ_CP010358.1 CP010358 117.483 37.0496 86 - - - 104 18

Acinetobacter junii NDM-WS1 Bacteria Proteobacteria Gammaproteobacteria pNDM-WS1 NC_024999.1 KJ018154 13.94 46.4132 13 - - - 13 -

Acinetobacter lwoffii ABZ78 Bacteria Proteobacteria Gammaproteobacteria pABZ78 NC_019323.1 JQ739158 4.797 65.666 5 - - - 6 -

Acinetobacter lwoffii Iz4b Bacteria Proteobacteria Gammaproteobacteria pNDM-Iz4b NC_025000.1 KJ547696 46.57 40.9105 55 - - - 55 -

Acinetobacter lwoffii WJ10659 Bacteria Proteobacteria Gammaproteobacteria pNDM-BJ02 NC_019281.1 JQ060896 46.165 40.9293 44 - - - 44 -

Acinetobacter lwoffii WJ10621 Bacteria Proteobacteria Gammaproteobacteria pNDM-BJ01 NC_019268.1 JQ001791 47.274 40.8279 46 - - - 46 -

Acinetobacter nosocomialis Bacteria Proteobacteria Gammaproteobacteria pAB49-v1 NC_023281.1 KC417495 2.2 39.6818 2 - - - 2 -

Acinetobacter nosocomialis Bacteria Proteobacteria Gammaproteobacteria pRAY*-v3 NC_023280.1 KC417494 6.078 39.1741 5 - - - 5 -

Acinetobacter nosocomialis Bacteria Proteobacteria Gammaproteobacteria p6411-89.111kb NZ_CP010369.1 CP010369 89.111 37.3601 75 - - - 84 9

Acinetobacter nosocomialis Bacteria Proteobacteria Gammaproteobacteria p6411-66.409kb NZ_CP010903.1 CP010903 66.409 36.3565 67 - - - 69 2

Acinetobacter nosocomialis Bacteria Proteobacteria Gammaproteobacteria p6411-9.012kb NZ_CP010370.2 CP010370 47.274 40.8279 56 - - - 56 -

Acinetobacter pittii ABCA95 Bacteria Proteobacteria Gammaproteobacteria pABCA95 NC_019322.2 JQ739157 6.544 47.6467 3 - - - 6 -

Acinetobacter pittii MS32 Bacteria Proteobacteria Gammaproteobacteria pMS32-1 NC_025173.1 KJ616405 94.418 37.4844 108 - - - 108 -

Acinetobacter pittii MS32 Bacteria Proteobacteria Gammaproteobacteria pMS32-3 NC_025137.1 KJ616406 11.465 36.3454 13 - - - 13 -

Acinetobacter pittii AP_882 Bacteria Proteobacteria Gammaproteobacteria pOXA58-AP_882 NZ_CP014479.1 CP014479 36.862 36.3464 42 - - - 43 1

Acinetobacter pittii AP_882 Bacteria Proteobacteria Gammaproteobacteria pNDM-AP_882 NZ_CP014478.1 CP014478 146.597 38.5854 134 - - - 143 9

Acinetobacter pittii D499 Bacteria Proteobacteria Gammaproteobacteria pAB_D499 NZ_AGFH01000030.1 AGFH01000030 47.101 40.7507 55 - - - 55 -

Acinetobacter radioresistens WC-A-157 Bacteria Proteobacteria Gammaproteobacteria pWCA157-6.5 NZ_ALIR01000020.1 ALIR01000020 6.534 36.3636 8 - - - 8 -

Acinetobacter radioresistens WC-A-157 Bacteria Proteobacteria Gammaproteobacteria pWCA157-53 NZ_ALIR01000021.1 ALIR01000021 53.388 36.3958 53 - - - 55 2

Acinetobacter radioresistens WC-A-157 Bacteria Proteobacteria Gammaproteobacteria pWCA157-7.5 NZ_ALIR01000018.1 ALIR01000018 7.532 30.7754 8 - - - 8 -

Acinetobacter radioresistens WC-A-157 Bacteria Proteobacteria Gammaproteobacteria pWCA157-71 NZ_ALIR01000019.1 ALIR01000019 70.57 37.5202 73 - - - 80 7

Acinetobacter sp. DUT-2 Bacteria Proteobacteria Gammaproteobacteria unnamed3 - CP014654.1 19.82 36.8668 21 - - - 31 10

Acinetobacter sp. DUT-2 Bacteria Proteobacteria Gammaproteobacteria unnamed5 - CP014656.1 5.511 57.6302 5 - - - 6 1

Acinetobacter sp. DUT-2 Bacteria Proteobacteria Gammaproteobacteria unnamed4 - CP014655.1 11.158 35.1138 13 - - - 13 -

Acinetobacter sp. DUT-2 Bacteria Proteobacteria Gammaproteobacteria unnamed2 - CP014653.1 50.047 36.9013 35 - - - 44 9

Acinetobacter sp. DUT-2 Bacteria Proteobacteria Gammaproteobacteria unnamed1 - CP014652.1 141.965 40.2134 135 - - - 149 14

Acinetobacter sp. EB104 Bacteria Proteobacteria Gammaproteobacteria pAC450 NC_002760.1 AJ311718 4.379 49.7374 4 - - - 4 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-4 NC_025121.1 JX101645 9.353 37.4639 14 - - - 14 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-2 NC_025172.1 JX101647 84.995 42.6602 91 - - - 91 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-8 NC_025119.1 JX101641 5.414 35.9254 7 - - - 7 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-11 NC_025117.1 JX101638 1.735 37.2334 2 - - - 2 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-5 NC_025171.1 JX101644 7.641 36.7622 10 - - - 10 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131_NDM1 NC_025116.1 JX072963 47.271 40.7798 50 - - - 50 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-10 NC_025169.1 JX101639 1.958 37.0276 1 - - - 1 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-9 NC_025118.1 JX101640 2.371 38.2539 3 - - - 3 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-7 NC_025170.1 JX101642 6.977 37.251 9 - - - 9 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-3 NC_025122.1 JX101646 9.541 34.6714 14 - - - 14 -

Acinetobacter sp. M131 Bacteria Proteobacteria Gammaproteobacteria pM131-6 NC_025120.1 JX101643 7.61 38.1603 10 - - - 10 -

Acinetobacter sp. SUN Bacteria Proteobacteria Gammaproteobacteria pRAY NC_000923.1 AF003958 6.076 39.2528 10 - - - 10 -

Acinetobacter venetianus VE-C3 Bacteria Proteobacteria Gammaproteobacteria pAV1 NC_010309.1 DQ278485 10.82 34.5564 11 - - - 11 -

Acinetobacter venetianus VE-C3 Bacteria Proteobacteria Gammaproteobacteria pAV2 NC_010310.1 DQ278486 15.135 36.4123 16 - - - 16 -

Acinetobacter venetianus VE-C3 Bacteria Proteobacteria Gammaproteobacteria pAV3 NZ_ALIG01000010.1 ALIG01000010 186.446 39.5573 173 - - - 191 18

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria pKMA2425 NC_007098.1 AJ830714 3.156 46.5146 5 - - - 5 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria pARD3079 NC_009625.1 AM748707 4.065 45.5105 7 - - - 7 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria p9956 NC_010042.1 AY362554 5.674 41.3994 5 - - - 5 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria p12494 NC_010889.1 DQ517426 14.393 32.9327 10 - - - 10 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria pMS260 NC_005312.1 AB109805 8.124 60.4751 10 - - - 10 -

Actinobacillus pleuropneumoniae APPHB0503 Bacteria Proteobacteria Gammaproteobacteria pHB0503 NC_010795.1 EU715370 15.079 41.6075 16 - - - 16 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria pTYM1 NC_003125.1 AF303375 4.242 47.9491 2 - - - 4 2

Actinobacillus pleuropneumoniae APP11745 Bacteria Proteobacteria Gammaproteobacteria p11745 NC_013546.1 DQ176855 5.486 38.097 4 - - - 4 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria p9555 NC_010069.1 AY359464 5.673 39.3619 9 - - - 9 -

Actinobacillus pleuropneumoniae Bacteria Proteobacteria Gammaproteobacteria pPSAS1522 NC_007099.1 AJ877041 4.244 48.2092 6 - - - 7 1

Actinobacillus pleuropneumoniae serovar 7 str. AP76 Bacteria Proteobacteria Gammaproteobacteria APP7_A NC_010942.1 CP001094 5.685 41.5128 5 - - - 6 1

Actinobacillus pleuropneumoniae serovar 7 str. AP76 Bacteria Proteobacteria Gammaproteobacteria ABB7_B NC_010941.1 CP001093 4.236 48.0878 4 - - - 4 -

Actinobacillus pleuropneumoniae serovar 7 str. AP76 Bacteria Proteobacteria Gammaproteobacteria APP7_C NC_010940.1 CP001092 3.533 41.7209 3 - - - 4 1

Actinobacillus porcitonsillarum Bacteria Proteobacteria Gammaproteobacteria pKMA5 NC_009623.1 AM748705 9.549 39.491 10 - - - 12 2

Actinobacillus porcitonsillarum Bacteria Proteobacteria Gammaproteobacteria pIMD50 NC_007095.1 AJ830711 8.751 40.9782 10 - - - 12 2

Actinobacillus porcitonsillarum Bacteria Proteobacteria Gammaproteobacteria pKMA505 NC_007094.1 AJ830710 8.632 38.0908 12 - - - 14 2

Actinobacillus porcitonsillarum Bacteria Proteobacteria Gammaproteobacteria pKMA757 NC_007097.1 AJ830713 4.556 48.6392 6 - - - 7 1

Actinobacillus porcitonsillarum Bacteria Proteobacteria Gammaproteobacteria pKMA202 NC_009624.1 AM748706 13.425 39.27 14 - - - 18 4

Actinobacillus porcitonsillarum Bacteria Proteobacteria Gammaproteobacteria pKMA1467 NC_007096.1 AJ830712 11.115 38.7584 12 - - - 13 1

Advenella kashmirensis WT001 Bacteria Proteobacteria Betaproteobacteria pWTk445 NC_017965.1 CP003556 57.884 46.7141 57 - - - 60 3

Advenella mimigardefordensis DPN7 Bacteria Proteobacteria Betaproteobacteria 24p NZ_CP003916.1 CP003916 23.61 45.7094 23 - - - 25 2

Aeromonas bestiarum 5S9 Bacteria Proteobacteria Gammaproteobacteria pAb5S9 NC_009476.1 EF495198 24.716 54.0055 16 - - - 16 -

Aeromonas caviae HGB5 Bacteria Proteobacteria Gammaproteobacteria pFBAOT6 NC_006143.1 - 84.749 57.2856 92 - - - 95 3

Aeromonas dhakensis AAK1 Bacteria Proteobacteria Gammaproteobacteria pAAk1 NC_019014.1 AP012343 4.161 54.5542 7 - - - 7 -

Aeromonas hydrophila AL06-06 Bacteria Proteobacteria Gammaproteobacteria pAH06-06-3 NZ_CP010950.1 CP010950 7.77 50.0129 8 - - - 8 -

Aeromonas hydrophila AL06-06 Bacteria Proteobacteria Gammaproteobacteria pAH06-06-1 NZ_CP010948.1 CP010948 2.838 58.2805 3 - - - 3 -

Aeromonas hydrophila AL06-06 Bacteria Proteobacteria Gammaproteobacteria pAH06-06-2 NZ_CP010949.1 CP010949 5.958 56.9822 8 - - - 8 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pRA3 NC_010919.1 DQ401103 45.909 53.5472 50 - - - 50 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pAHH04 NC_019262.1 JN315883 7.191 59.8804 5 - - - 5 -

Aeromonas hydrophila AO1 Bacteria Proteobacteria Gammaproteobacteria pBRST7.6 NC_011207.1 EU925817 7.621 59.7297 6 - - - 6 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pRA1 NC_012885.1 FJ705807 143.963 50.5797 158 - - - 158 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pAQ2-2 NC_016849.1 JN315885 6.903 51.7022 4 - - - 4 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pAH3680 NC_013780.1 DQ402049 3.68 55.8152 2 - - - 2 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pAHH01 NC_016852.1 JN315882 8.979 53.8367 14 - - - 14 -

Aeromonas hydrophila Bacteria Proteobacteria Gammaproteobacteria pR148 NC_019380.1 JX141473 165.906 52.5093 146 - - - 146 -

Aeromonas hydrophila 410 Bacteria Proteobacteria Gammaproteobacteria pAhy2.5 NC_021159.1 KC525245 2.524 56.5769 2 - - - 2 -

Aeromonas hydrophila JBN2301 Bacteria Proteobacteria Gammaproteobacteria 3 NZ_CP013181.1 CP013181 6.045 51.4971 7 - - - 7 -

Aeromonas hydrophila JBN2301 Bacteria Proteobacteria Gammaproteobacteria 2 NZ_CP013180.1 CP013180 6.162 54.2681 7 - - - 7 -

Aeromonas hydrophila JBN2301 Bacteria Proteobacteria Gammaproteobacteria 1 NZ_CP013179.1 CP013179 6.318 56.252 8 - - - 8 -

Aeromonas hydrophila D4 Bacteria Proteobacteria Gammaproteobacteria pAhD4-2 NZ_CP013967.1 CP013967 6.318 56.252 8 - - - 8 -

Aeromonas hydrophila D4 Bacteria Proteobacteria Gammaproteobacteria pAhD4-1 NZ_CP013966.1 CP013966 156.086 50.1224 148 - - - 149 1

Aeromonas hydrophila D4 Bacteria Proteobacteria Gammaproteobacteria pAhD4-4 NZ_CP013969.1 CP013969 6.045 51.4971 7 - - - 7 -

Aeromonas hydrophila D4 Bacteria Proteobacteria Gammaproteobacteria pAhD4-3 NZ_CP013968.1 CP013968 6.163 54.2755 6 - - - 7 1

Aeromonas media WS Bacteria Proteobacteria Gammaproteobacteria pWSY NZ_CP007568.1 CP007568 11.276 55.9596 13 - - - 13 -

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pRAS3.1 NC_003123.1 AY043298 11.851 58.9149 7 - - - 7 -

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pAsal3 NC_004340.1 AJ508384 5.249 52.1433 6 - - 2 8 -

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pRAS3.2 NC_003124.1 AY043299 11.823 59.0121 7 - - - 7 -

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pAsal1B NC_025018.1 KC686700 8.989 55.6347 5 - - - 7 -

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pAsa6 NC_009352.2 AM258965 18.536 53.852 16 - - - 17 1

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pAsal1 NC_004338.1 AJ508382 6.371 55.0306 4 - - - 4 -

Aeromonas salmonicida Bacteria Proteobacteria Gammaproteobacteria pAsal2 NC_004339.1 AJ508383 5.424 57.0243 7 - - - 7 -

Aeromonas salmonicida subsp. salmonicida A449 Bacteria Proteobacteria Gammaproteobacteria 4 NC_009349.1 CP000645 166.749 52.7979 164 - - - 175 11

Aeromonas salmonicida subsp. salmonicida A449 Bacteria Proteobacteria Gammaproteobacteria pAsa2 NC_004925.1 AY301064 5.247 52.2013 6 - - 2 8 -

Aeromonas salmonicida subsp. salmonicida A449 Bacteria Proteobacteria Gammaproteobacteria 5 NC_009350.1 CP000646 155.098 54.3315 157 - - - 168 11

Aeromonas salmonicida subsp. salmonicida A449 Bacteria Proteobacteria Gammaproteobacteria pAsa3 NC_004924.1 AY301065 5.616 54.5228 8 - - 1 9 -

Aeromonas salmonicida subsp. salmonicida A449 Bacteria Proteobacteria Gammaproteobacteria pAsa1 NC_004923.1 AY301063 5.424 57.0243 9 - - 1 10 -

Aeromonas sobria Bacteria Proteobacteria Gammaproteobacteria pAQ2-1 NC_016611.1 JN315884 6.9 51.6087 4 - - - 4 -

Aggregatibacter actinomycetemcomitans S23A Bacteria Proteobacteria Gammaproteobacteria pS23A NC_021724.1 JX436327 24.102 38.0093 40 - - - 40 -

Aggregatibacter actinomycetemcomitans VT745 Bacteria Proteobacteria Gammaproteobacteria pVT745 NC_002579.1 AF302424 25.407 39.0247 36 - - - 36 -

Aggregatibacter actinomycetemcomitans D11S-1 Bacteria Proteobacteria Gammaproteobacteria S25 - GQ866234.1 31.045 33.2904 43 - - - 43 -

Aggregatibacter actinomycetemcomitans D11S-1 Bacteria Proteobacteria Gammaproteobacteria S57 - GQ866235.1 23.886 38.353 42 - - - 42 -

Agrobacterium fabrum str. C58 Bacteria Proteobacteria Alphaproteobacteria Ti NC_003065.3 AE007871 214.233 56.6696 197 - - - 199 2

Agrobacterium fabrum str. C58 Bacteria Proteobacteria Alphaproteobacteria At NC_003064.2 AE007872 542.868 57.3316 542 - - - 557 15

Agrobacterium radiobacter K84 Bacteria Proteobacteria Alphaproteobacteria pAtK84c NC_011987.1 CP000631 388.169 57.0084 338 - - - 354 16

Agrobacterium radiobacter K84 Bacteria Proteobacteria Alphaproteobacteria pAtK84b NC_011990.1 CP000630 184.668 58.9918 177 - - - 179 2

Agrobacterium radiobacter K84 Bacteria Proteobacteria Alphaproteobacteria pAgK84 NC_011994.1 CP000632 44.42 53.5367 39 - - - 39 -

Agrobacterium rhizogenes MAFF03-01724 Bacteria Proteobacteria Alphaproteobacteria pRi1724 NC_002575.1 AP002086 217.594 57.3164 173 - - - 173 -

Agrobacterium rhizogenes K599 Bacteria Proteobacteria Alphaproteobacteria pRi2659 NC_010841.1 EU186381 185.462 58.1176 146 - - - 146 -

Agrobacterium sp. H13-3 Bacteria Proteobacteria Alphaproteobacteria pAspH13-3a NC_015184.1 CP002250 601.551 57.4184 551 - - - 586 35

Agrobacterium tumefaciens Ach5 Bacteria Proteobacteria Alphaproteobacteria pAt NZ_CP011248.1 CP011248 544.752 57.5715 499 - - - 524 25

Agrobacterium tumefaciens Ach5 Bacteria Proteobacteria Alphaproteobacteria pTi NZ_CP011249.1 CP011249 194.264 54.6524 162 - - - 177 15

Agrobacterium tumefaciens K84 Bacteria Proteobacteria Alphaproteobacteria pAgK84 NC_006277.2 AY442931 44.42 53.5367 36 - - - 36 -

Agrobacterium tumefaciens Bo542 Bacteria Proteobacteria Alphaproteobacteria Ti plasmid pTiBo542 NC_010929.1 DQ058764 244.978 55.1245 223 - - - 223 -

Agrobacterium tumefaciens F64/95 Bacteria Proteobacteria Alphaproteobacteria pAoF64/95 NC_019555.1 JX683454 176.574 58.8167 178 - - - 178 -

Agrobacterium tumefaciens MAFF301001 Bacteria Proteobacteria Alphaproteobacteria pTi-SAKURA NC_002147.1 AB016260 206.479 56.0018 195 - - - 196 -

Agrobacterium tumefaciens Bacteria Proteobacteria Alphaproteobacteria Ti NC_002377.1 AF242881 194.14 54.6235 157 - - - 157 -

Agrobacterium tumefaciens F2 Bacteria Proteobacteria Alphaproteobacteria unnamed p1 NZ_AFSD01000007.1 AFSD01000007 105.065 56.7144 112 - 1 - 117 4

Agrobacterium tumefaciens F2 Bacteria Proteobacteria Alphaproteobacteria unnamed p2 NZ_AFSD01000008.1 AFSD01000008 401.969 59.5252 340 - - - 350 10

Agrobacterium tumefaciens LBA4213 (Ach5) Bacteria Proteobacteria Alphaproteobacteria pTi NZ_CP007228.1 CP007228 205.997 55.0265 175 - - - 190 15

Agrobacterium tumefaciens LBA4213 (Ach5) Bacteria Proteobacteria Alphaproteobacteria pAt NZ_CP007227.1 CP007227 556.485 57.645 508 - - - 537 29

Agrobacterium tumefaciens P4 Bacteria Proteobacteria Alphaproteobacteria pA NZ_CM002260.1 CM002260 661.825 56.7399 603 - - - 629 26

Agrobacterium vitis S4 Bacteria Proteobacteria Alphaproteobacteria pAtS4e NC_011981.1 CP000638 631.775 56.5652 543 - - - 560 17

Agrobacterium vitis S4 Bacteria Proteobacteria Alphaproteobacteria pTiS4 NC_011982.1 CP000637 258.824 56.6574 214 - - 1 248 33

Agrobacterium vitis S4 Bacteria Proteobacteria Alphaproteobacteria pAtS4b NC_011991.1 CP000635 130.435 56.2311 103 - - - 111 8

Agrobacterium vitis S4 Bacteria Proteobacteria Alphaproteobacteria pAtS4a NC_011986.1 CP000639 78.73 56.7611 85 - - - 85 -

Agrobacterium vitis S4 Bacteria Proteobacteria Alphaproteobacteria pAtS4c NC_011984.1 CP000636 211.62 58.6178 167 - - - 197 30

Alcaligenes faecalis ZD02 Bacteria Proteobacteria Betaproteobacteria pZD02 NZ_CP013143.1 CP013143 14.928 58.829 14 - - - 14 -

Alicycliphilus denitrificans BC Bacteria Proteobacteria Betaproteobacteria pALIDE02 NC_014911.1 CP002451 78.982 64.4349 83 - - - 85 2

Alicycliphilus denitrificans BC Bacteria Proteobacteria Betaproteobacteria pALIDE01 NC_014908.1 CP002450 119.718 58.3003 102 - - - 108 6

Alicycliphilus denitrificans K601 Bacteria Proteobacteria Betaproteobacteria pALIDE201 NC_015423.1 CP002658 75.488 62.2324 87 - - - 87 -

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Bacteria Terrabacteria group Firmicutes pAACI02 NC_013207.1 CP001729 87.298 55.424 79 - - - 87 8

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Bacteria Terrabacteria group Firmicutes pAACI03 NC_013208.1 CP001730 7.907 54.3443 8 - - - 8 -

Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Bacteria Terrabacteria group Firmicutes pAACI01 NC_013206.1 CP001728 91.726 54.1351 82 - - - 83 1

Aliiroseovarius crassostreae CV919-312 Bacteria Proteobacteria Alphaproteobacteria unnamed NZ_CM003503.1 CM003503 18.548 58.3459 21 - - - 22 1

Aliivibrio fischeri CG103 Bacteria Proteobacteria Gammaproteobacteria pCG103-32 NC_016850.1 JQ031550 32.073 37.2245 37 - - - 37 -

Aliivibrio fischeri KB1A-97 Bacteria Proteobacteria Gammaproteobacteria pKB1A97-67 NC_016851.1 JQ031552 76.221 41.6919 99 - - - 99 -

Aliivibrio fischeri ES213 Bacteria Proteobacteria Gammaproteobacteria pES213 NC_011403.1 AY465897 5.501 37.9204 9 - - - 9 -

Aliivibrio fischeri ES657 Bacteria Proteobacteria Gammaproteobacteria pES657-44 NC_016853.1 JQ031551 48.951 38.0952 83 - - - 83 -

Aliivibrio salmonicida LFI1238 Bacteria Proteobacteria Gammaproteobacteria pVSAL320 NC_011314.1 FM178382 30.807 37.287 30 - - - 32 2

Aliivibrio salmonicida LFI1238 Bacteria Proteobacteria Gammaproteobacteria pVSAL840 NC_011311.1 FM178381 83.54 40.0706 75 - - - 75 -

Aliivibrio salmonicida LFI1238 Bacteria Proteobacteria Gammaproteobacteria pVSAL54 NC_011315.1 FM178383 5.36 38.097 3 - - - 3 -

Aliivibrio salmonicida LFI1238 Bacteria Proteobacteria Gammaproteobacteria pVSAL43 NC_011316.1 FM178384 4.327 35.6136 3 - - - 3 -

Aliivibrio wodanis Bacteria Proteobacteria Gammaproteobacteria pAWOD19 NZ_LN554851.1 LN554851 2.069 37.4577 3 - - - 3 -

Aliivibrio wodanis Bacteria Proteobacteria Gammaproteobacteria pAWOD72 NZ_LN554850.1 LN554850 7.177 34.8614 9 - - - 9 -

Aliivibrio wodanis Bacteria Proteobacteria Gammaproteobacteria pAWOD920 NZ_LN554848.1 LN554848 91.951 38.3313 92 - - - 97 5

Aliivibrio wodanis Bacteria Proteobacteria Gammaproteobacteria pAWOD150 NZ_LN554849.1 LN554849 15.266 36.2243 16 - - - 18 2

Allochromatium vinosum DSM 180 Bacteria Proteobacteria Gammaproteobacteria pALVIN01 NC_013852.1 CP001897 102.242 61.9383 112 - - - 116 4

Allochromatium vinosum DSM 180 Bacteria Proteobacteria Gammaproteobacteria pALVIN02 NC_013862.1 CP001898 39.929 53.4699 38 - - - 38 -

alpha proteobacterium endosymbiont of Amoeba proteus Bacteria Proteobacteria Alphaproteobacteria pAP3.9 NC_010983.1 EU727537 3.869 34.6601 3 - - - 3 -

Altererythrobacter atlanticus 26DY36 Bacteria Proteobacteria Alphaproteobacteria unnamed NZ_CP011453.2 CP011453 88.815 62.3678 58 - - - 63 5

Alteromonas macleodii HOT1A3 Bacteria Proteobacteria Gammaproteobacteria pAM1A3 NZ_CP012203.1 CP012203 148.934 42.2623 110 - - - 158 48

Alteromonas macleodii str. 'Balearic Sea AD45' Bacteria Proteobacteria Gammaproteobacteria pAMBAS45 NC_018680.1 CP003874 45.406 49.7247 53 - - - 54 1

Alteromonas mediterranea U10 Bacteria Proteobacteria Gammaproteobacteria pAMED10_300 - CP013931.1 292.506 41.5239 244 - - - 252 8

Alteromonas mediterranea UM8 Bacteria Proteobacteria Gammaproteobacteria pAMEDUM8_300 NZ_CP013929.1 CP013929 287.708 41.4448 242 - - - 249 7

Alteromonas mediterranea 615 English Channel 615 Bacteria Proteobacteria Gammaproteobacteria unnamed - CP004847.1 200.847 42.9227 216 - - - 216 -

Alteromonas mediterranea DE1 AltDE1 Bacteria Proteobacteria Gammaproteobacteria pAMDE1-300 NC_019394.1 CP003918 303.282 41.4317 275 - - - 282 7

Alteromonas mediterranea U4 Ionian Sea U4 Bacteria Proteobacteria Gammaproteobacteria unnamed - CP004850.1 303.282 41.4317 282 - - - 282 -

Alteromonas mediterranea UM7 Ionian Sea UM7 Bacteria Proteobacteria Gammaproteobacteria unnamed NC_021718.1 CP004854 303.282 41.4317 276 - - - 283 7

Alteromonas stellipolaris LMG 21861 Bacteria Proteobacteria Gammaproteobacteria pASTE61-200 NZ_CP013927.1 CP013927 252.173 41.4287 236 - - - 243 7

Aminobacter aminovorans KCTC 2477 Bacteria Proteobacteria Alphaproteobacteria pAA04 - CP015009.1 138.061 59.7062 124 - - 1 125 -

Aminobacter aminovorans KCTC 2477 Bacteria Proteobacteria Alphaproteobacteria pAA01 - CP015006.1 534.207 63.2075 479 - - - 479 -

Aminobacter aminovorans KCTC 2477 Bacteria Proteobacteria Alphaproteobacteria pAA02 - CP015007.1 451.547 60.6484 420 - - - 424 4

Aminobacter aminovorans KCTC 2477 Bacteria Proteobacteria Alphaproteobacteria pAA03 - CP015008.1 142.965 61.7193 123 - - - 124 1

Ammonifex degensii KC4 Bacteria Terrabacteria group Firmicutes pADEG01 NC_013386.1 CP001786 27.83 60.7438 28 - - - 29 1

Amycolatopsis benzoatilytica DSM 43387 Bacteria Terrabacteria group Actinobacteria pA387 NC_010905.1 EF375609 30.157 71.7412 16 - - - 16 -

Amycolatopsis japonica DSM 44213 Bacteria Terrabacteria group Actinobacteria pAmyja1 NZ_CP008954.1 CP008954 92.539 68.2296 124 - - - 126 2

Amycolatopsis mediterranei Bacteria Terrabacteria group Actinobacteria pMEA100 NC_010852.1 EU149765 23.29 68.4414 27 - - - 27 -

Amycolatopsis orientalis HCCB10007 Bacteria Terrabacteria group Actinobacteria pXL100 NC_023497.1 CP003411 33.499 68.9006 44 - - - 46 2

Amycolicicoccus subflavus DQS3-9A1 Bacteria Terrabacteria group Actinobacteria pAS9A-2 NC_015561.1 CP002788 106.784 61.8576 93 - - - 94 1

Amycolicicoccus subflavus DQS3-9A1 Bacteria Terrabacteria group Actinobacteria pAS9A-1 NC_015560.1 CP002787 17.897 63.8655 20 - - - 20 -

Anabaena cylindrica PCC 7122 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANACY.02 NC_020157.1 CP003661 177.682 38.0781 142 - - - 144 2

Anabaena cylindrica PCC 7122 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANACY.05 NC_020056.1 CP003664 20.633 38.1961 18 - - - 18 -

Anabaena cylindrica PCC 7122 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANACY.04 NC_019774.1 CP003663 97.606 40.0938 65 - - - 69 4

Anabaena cylindrica PCC 7122 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANACY.03 NC_019773.1 CP003662 128.78 38.3701 125 - - - 130 5

Anabaena cylindrica PCC 7122 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANACY.06 NC_019775.1 CP003665 22.823 37.1161 24 - - - 24 -

Anabaena cylindrica PCC 7122 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANACY.01 NC_019772.1 CP003660 219.925 39.1024 140 - - - 153 13

Anabaena sp. 90 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANA03 NC_019440.1 CP003288 20.025 37.4182 18 - - - 18 -

Anabaena sp. 90 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANA01 NC_019428.1 CP003286 80.384 37.2313 85 - - - 90 5

Anabaena sp. 90 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group pANA02 NC_019429.1 CP003287 56.037 37.254 52 - - - 52 -

Anabaena sp. wa102 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group unnamed NZ_CP011457.1 CP011457 76.597 37.1555 84 - - - 89 5

Anabaena variabilis ATCC 29413 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group D NC_021575.1 KC733807 27.051 39.4588 18 - - - 18 -

Anabaena variabilis ATCC 29413 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group B - CP000120.1 35.762 38.499 31 - - - 32 1

Anabaena variabilis ATCC 29413 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group C - CP000121.1 300.758 41.9533 243 - - - 247 4

Anabaena variabilis ATCC 29413 Bacteria Terrabacteria group Cyanobacteria/Melainabacteria group A - CP000119.1 366.354 40.5332 344 - - - 350 6

Anaerococcus prevotii DSM 20548 Bacteria Terrabacteria group Firmicutes pAPRE01 NC_013164.1 CP001709 115.566 28.6347 96 - - - 100 4

Aquifex aeolicus VF5 Bacteria Aquificae Aquificae ece1 NC_001880.1 AE000667 39.456 36.4381 29 - - - 29 -

Archaeoglobus profundus AV18 Archaea Euryarchaeota Archaeoglobi pGS5 NC_012890.1 FJ707368 2.802 39.8644 4 - - - 4 -

Archaeoglobus profundus DSM 5631 Archaea Euryarchaeota Archaeoglobi pArcpr01 NC_013742.1 CP001858 2.801 39.8429 4 - - - 4 -

archaeon enrichment culture clone 1(2010) Archaea environmental samples archaeon enrichment culture clone 1(2010) hyperthermophilic archaeal plasmid 1 NC_025027.1 GU722198 33.795 45.3736 59 - - - 59 -

Arcobacter butzleri ER5551 Bacteria Proteobacteria delta/epsilon subdivisions pDWAN NC_023902.1 KF955987 1.921 27.1213 1 - - - 1 -

Arcobacter butzleri NCTC12481 Bacteria Proteobacteria delta/epsilon subdivisions unnamed NC_012733.1 EU707943 1.92 26.8229 1 - - - 1 -

Arcobacter butzleri AC1167 Bacteria Proteobacteria delta/epsilon subdivisions AB-1167-LD NC_025123.1 KF740631 4.903 26.2492 11 - - - 11 -

Arcobacter butzleri AC1166 Bacteria Proteobacteria delta/epsilon subdivisions AB-1166-LD NC_025124.1 KF740632 4.844 26.1148 9 - - - 9 -

Arcobacter butzleri AC1163 Bacteria Proteobacteria delta/epsilon subdivisions AB-1163-LD NC_025125.1 KF740633 5.154 25.844 6 - - - 6 -

Arcobacter butzleri AC1119 Bacteria Proteobacteria delta/epsilon subdivisions AB-1119-LD NC_025153.1 KF740630 27.476 25.6369 35 - - - 35 -

Arcobacter cryaerophilus AC637 Bacteria Proteobacteria delta/epsilon subdivisions AC-6347-LD NC_025126.1 KF740634 5.104 25.3918 7 - - - 7 -

Arcobacter sp. L Bacteria Proteobacteria delta/epsilon subdivisions pABL NC_017193.1 AP012049 1.989 46.6063 2 - - - 2 -

Aromatoleum aromaticum EbN1 Bacteria Proteobacteria Betaproteobacteria 2 NC_006824.1 CR555308 223.67 63.1055 188 - - - 205 17

Aromatoleum aromaticum EbN1 Bacteria Proteobacteria Betaproteobacteria 1 NC_006823.1 CR555307 207.355 57.633 232 - - - 234 2

Arthrobacter alpinus Bacteria Terrabacteria group Actinobacteria pRK01 NZ_CP013201.1 CP013201 11.169 55.6361 14 - - - 14 -

Arthrobacter rhombi PRH1 Bacteria Terrabacteria group Actinobacteria pPRH NC_016615.1 HQ624979 5 66.44 6 - - - 6 -

Arthrobacter sp. 31.31 31-32 Bacteria Terrabacteria group Actinobacteria p3132-53 NC_019326.1 JQ418520 47.826 63.4383 52 - - - 52 -

Arthrobacter sp. A3 Bacteria Terrabacteria group Actinobacteria unnamed NZ_CP013746.1 CP013746 194.226 57.1103 170 - - - 178 8

Arthrobacter sp. AK-1 Bacteria Terrabacteria group Actinobacteria pSI-1 NC_010494.1 EF495211 99.213 61.9929 97 - - - 99 2

Arthrobacter sp. Chr15 Bacteria Terrabacteria group Actinobacteria pChr15 NC_010492.1 EF495212 49.633 62.2952 63 - - - 63 -

Arthrobacter sp. ERGS1:01 Bacteria Terrabacteria group Actinobacteria unnamed2 NZ_CP012477.1 CP012477 754.192 64.7924 604 14 11 - 664 35

Arthrobacter sp. ERGS1:01 Bacteria Terrabacteria group Actinobacteria unnamed1 NZ_CP012478.1 CP012478 152.177 60.7963 137 - - - 142 5

Arthrobacter sp. FB24 Bacteria Terrabacteria group Actinobacteria 2 NC_008538.1 CP000456 115.507 63.3208 108 - - - 110 2

Arthrobacter sp. FB24 Bacteria Terrabacteria group Actinobacteria 3 NC_008539.1 CP000457 96.488 64.6733 97 - - - 100 3

Arthrobacter sp. FB24 Bacteria Terrabacteria group Actinobacteria 1 NC_008537.1 CP000455 159.538 65.029 152 - - - 158 6

Arthrobacter sp. Hiyo8 Bacteria Terrabacteria group Actinobacteria pHiyo8-1 - AP014720.1 313.409 63.3479 426 - - - 427 -

Arthrobacter sp. Hiyo8 Bacteria Terrabacteria group Actinobacteria pHiyo8-2 - AP014721.1 14.696 60.411 27 - - - 28 -

Arthrobacter sp. IHBB 11108 Bacteria Terrabacteria group Actinobacteria pAG001 NZ_CP011006.1 CP011006 3.716 55.3283 5 - - - 5 -

Arthrobacter sp. J3.37 J3-37 Bacteria Terrabacteria group Actinobacteria pJ337-114 NC_019338.1 JQ418527 88.007 61.7576 98 - - - 98 -

Arthrobacter sp. J3.40 J3-40 Bacteria Terrabacteria group Actinobacteria pJ340-69 NC_019330.1 JQ418528 61.044 61.1264 73 - - - 73 -

Arthrobacter sp. J3.40 J3-40 Bacteria Terrabacteria group Actinobacteria pJ340-114 NC_019331.1 JQ418529 98.081 62.0191 112 - - - 112 -

Arthrobacter sp. J3.49 J3-49 Bacteria Terrabacteria group Actinobacteria pJ349-116 NC_019339.1 JQ418530 103.121 62.3481 113 - - - 113 -

Arthrobacter sp. J3.53 J3-53 Bacteria Terrabacteria group Actinobacteria pJ353-116 NC_019332.1 JQ418531 90.042 61.328 104 - - - 104 -

Arthrobacter sp. Rue61a Bacteria Terrabacteria group Actinobacteria pAL1 NC_009453.1 CP003205 112.992 60.8751 107 - - - 111 4

Arthrobacter sp. Rue61a Bacteria Terrabacteria group Actinobacteria p232 NC_018532.1 CP003204 231.551 61.5147 206 - - - 210 4

Arthrobacter sp. YC-RL1 Bacteria Terrabacteria group Actinobacteria unnamed 2 NZ_CP013299.1 CP013299 59.604 58.9625 56 - - - 60 4

Arthrobacter sp. YC-RL1 Bacteria Terrabacteria group Actinobacteria unnamed 1 NZ_CP013298.1 CP013298 112.763 57.8124 92 - 1 - 97 4

Aster yellows phytoplasma Japanese honewort witches' broom phytoplasma Bacteria Terrabacteria group Tenericutes extrachromosomal DNA NC_003353.1 AB064396 4.278 23.9364 2 - - - 2 -

Aster yellows witches'-broom phytoplasma AYWB Bacteria Terrabacteria group Tenericutes pAYWB-III NC_007719.1 CP000064 5.104 21.7672 7 - - - 7 -

Aster yellows witches'-broom phytoplasma AYWB Bacteria Terrabacteria group Tenericutes pAYWB-IV NC_007720.1 CP000065 4.316 24.3513 6 - - - 6 -

Aster yellows witches'-broom phytoplasma AYWB Bacteria Terrabacteria group Tenericutes pAYWB-II NC_007718.1 CP000063 4.009 23.9461 4 - - - 4 -

Aster yellows witches'-broom phytoplasma AYWB Bacteria Terrabacteria group Tenericutes pAYWB-I NC_007717.1 CP000062 3.972 25.6042 5 - - - 5 -

Asticcacaulis excentricus CB 48 CS 48 Bacteria Proteobacteria Alphaproteobacteria pASTEX02 NC_014819.1 CP002398 160.346 57.2581 139 - - - 144 5

Asticcacaulis excentricus CB 48 CS 48 Bacteria Proteobacteria Alphaproteobacteria pASTEX01 NC_014818.1 CP002397 244.26 59.8125 178 - - - 178 -

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20b NZ_CP006369.1 CP006369 436.017 67.0089 392 - - - 395 3

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20e NZ_CP006372.1 CP006372 57.21 59.3445 44 - - - 45 1

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20f NZ_CP006373.1 CP006373 35.461 61.7777 28 - - - 30 2

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20d NZ_CP006371.1 CP006371 101.355 61.031 82 - - - 86 4

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20g NZ_CP006374.1 CP006374 28.258 61.1827 36 - - - 36 -

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20rrn NZ_CP006375.1 CP006375 9.393 58.0219 2 3 2 - 7 -

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20c NZ_CP006370.1 CP006370 311.483 68.1058 265 - - - 272 7

Aureimonas sp. AU20 Bacteria Proteobacteria Alphaproteobacteria pAU20a NZ_CP006368.1 CP006368 488.888 67.8309 407 - - - 414 7

Avibacterium paragallinarum A14 Bacteria Proteobacteria Gammaproteobacteria pYMH5 NC_010912.1 EF015636 5.047 50.7826 4 - - - 5 1

Avibacterium paragallinarum HP250 Bacteria Proteobacteria Gammaproteobacteria p250 NC_005245.1 AY300023 6.286 33.503 7 - - - 7 -

Azoarcus sp. KH32C Bacteria Proteobacteria Betaproteobacteria pAZKH NC_020548.1 AP012305 737.589 64.5087 632 - - - 643 11

Azospirillum brasilense Az39 Bacteria Proteobacteria Alphaproteobacteria AbAZ39_p2 NZ_CP007795.1 CP007795 933.96 68.5851 744 3 4 - 769 18

Azospirillum brasilense Az39 Bacteria Proteobacteria Alphaproteobacteria AbAZ39_p3 NZ_CP007796.1 CP007796 686.487 69.5162 532 - - - 547 15

Azospirillum brasilense Az39 Bacteria Proteobacteria Alphaproteobacteria AbAZ39_p1 NZ_CP007794.1 CP007794 1901.71 68.4428 1601 11 26 - 1670 32

Azospirillum brasilense Az39 Bacteria Proteobacteria Alphaproteobacteria AbAZ39_p4 NZ_CP007797.1 CP007797 641.573 69.209 554 6 12 - 582 10

Azospirillum brasilense Az39 Bacteria Proteobacteria Alphaproteobacteria AbAZ39_p5 NZ_CP007798.1 CP007798 163.159 65.6262 105 - 1 - 112 6

Azospirillum brasilense Sp 7 Bacteria Proteobacteria Alphaproteobacteria ABSP7_p1 NZ_CP012915.1 CP012915 1754.52 68.5032 1507 8 23 - 1554 16

Azospirillum brasilense Sp 7 Bacteria Proteobacteria Alphaproteobacteria ABSP7_p3 NZ_CP012917.1 CP012917 645.064 69.0307 555 9 15 - 584 5

Azospirillum brasilense Sp 7 Bacteria Proteobacteria Alphaproteobacteria ABSP7_p2 NZ_CP012916.1 CP012916 819.02 68.6104 629 6 7 - 648 6

Azospirillum brasilense Sp 7 Bacteria Proteobacteria Alphaproteobacteria ABSP7_p5 NZ_CP012919.1 CP012919 156.48 67.4086 110 - 1 - 115 4

Azospirillum brasilense Sp 7 Bacteria Proteobacteria Alphaproteobacteria ABSP7_p4 NZ_CP012918.1 CP012918 206.714 65.8417 171 - - - 182 11

Azospirillum brasilense Sp245 Bacteria Proteobacteria Alphaproteobacteria AZOBR_p2 NC_016618.1 HE577329 912.449 68.3236 707 2 2 3 768 54

Azospirillum brasilense Sp245 Bacteria Proteobacteria Alphaproteobacteria AZOBR_p1 NC_016594.1 HE577328 1766.03 68.6175 1429 8 25 3 1571 106

Azospirillum brasilense Sp245 Bacteria Proteobacteria Alphaproteobacteria AZOBR_p4 NC_016596.1 HE577331 690.334 68.9739 556 1 9 3 606 37

Azospirillum brasilense Sp245 Bacteria Proteobacteria Alphaproteobacteria AZOBR_p5 NC_016619.1 HE577332 191.828 66.6342 135 - - - 146 11

Azospirillum brasilense Sp245 Bacteria Proteobacteria Alphaproteobacteria AZOBR_p6 NC_016597.1 HE577333 167.364 66.7593 107 - 1 1 111 2

Azospirillum brasilense Sp245 Bacteria Proteobacteria Alphaproteobacteria AZOBR_p3 NC_016595.1 HE577330 778.798 68.2181 677 - - - 706 29

Azospirillum lipoferum 4B Bacteria Proteobacteria Alphaproteobacteria AZO_p5 NC_016624.1 FQ311873 478.032 67.7333 384 3 8 - 398 3

Azospirillum lipoferum 4B Bacteria Proteobacteria Alphaproteobacteria AZO_p2 NC_016586.1 FQ311870 750.123 67.5937 615 6 5 - 636 10

Azospirillum lipoferum 4B Bacteria Proteobacteria Alphaproteobacteria AZO_p6 NC_016588.1 FQ311874 295.744 67.081 223 - - - 226 3

Azospirillum lipoferum 4B Bacteria Proteobacteria Alphaproteobacteria AZO_p4 NC_016587.1 FQ311872 645.253 68.2997 555 - 6 - 566 5

Azospirillum lipoferum 4B Bacteria Proteobacteria Alphaproteobacteria AZO_p1 NC_016585.1 FQ311869 1040.42 67.5707 865 8 12 - 894 9

Azospirillum lipoferum 4B Bacteria Proteobacteria Alphaproteobacteria AZO_p3 NC_016623.1 FQ311871 648.491 67.8211 515 3 2 - 526 6

Azospirillum sp. B510 Bacteria Proteobacteria Alphaproteobacteria pAB510a NC_013855.1 AP010947 1455.11 67.6439 1126 11 14 - 1174 22

Azospirillum sp. B510 Bacteria Proteobacteria Alphaproteobacteria pAB510e NC_013859.1 AP010951 537.299 67.5144 422 3 9 - 441 7

Azospirillum sp. B510 Bacteria Proteobacteria Alphaproteobacteria pAB510b NC_013856.1 AP010948 723.779 67.4649 607 3 2 - 643 31

Azospirillum sp. B510 Bacteria Proteobacteria Alphaproteobacteria pAB510d NC_013858.1 AP010950 628.837 67.972 531 - 6 - 544 7

Azospirillum sp. B510 Bacteria Proteobacteria Alphaproteobacteria pAB510f NC_013860.1 AP010952 261.596 65.8817 179 - - - 192 13

Azospirillum sp. B510 Bacteria Proteobacteria Alphaproteobacteria pAB510c NC_013857.1 AP010949 681.723 67.3978 528 3 3 - 552 18

Azotobacter chroococcum NCIMB 8003 Bacteria Proteobacteria Gammaproteobacteria pAcX50b NZ_CP010417.1 CP010417 13.852 55.3422 10 - - - 10 -

Azotobacter chroococcum NCIMB 8003 Bacteria Proteobacteria Gammaproteobacteria pAcX50d NZ_CP010419.1 CP010419 69.317 59.2322 55 - - - 62 7

Azotobacter chroococcum NCIMB 8003 Bacteria Proteobacteria Gammaproteobacteria pAcX50f NZ_CP010421.1 CP010421 311.724 62.6715 286 - - - 305 19

Azotobacter chroococcum NCIMB 8003 Bacteria Proteobacteria Gammaproteobacteria pAcX50e NZ_CP010420.1 CP010420 132.372 61.8794 108 - - - 121 13

Azotobacter chroococcum NCIMB 8003 Bacteria Proteobacteria Gammaproteobacteria pAcX50c NZ_CP010418.1 CP010418 62.783 56.7638 49 - - - 51 2

Azotobacter chroococcum NCIMB 8003 Bacteria Proteobacteria Gammaproteobacteria pAcX50a NZ_CP010416.1 CP010416 10.435 57.3551 9 - - - 9 -

Bacillaceae bacterium JMAK1 Bacteria Terrabacteria group Firmicutes pGIAK1 NC_022368.1 JX406743 38.362 37.5059 49 - - - 49 -

Bacillus amyloliquefaciens B3 Bacteria Terrabacteria group Firmicutes pBSG3 NC_014104.1 GU937616 8.439 40.3247 7 - - - 7 -

Bacillus amyloliquefaciens MBE1283 Bacteria Terrabacteria group Firmicutes Unnamed 1 NZ_CP013728.1 CP013728 13.003 42.5594 9 - - - 10 1

Bacillus amyloliquefaciens IT-45 Bacteria Terrabacteria group Firmicutes pBA45-1 NC_020273.1 CP004119 8.009 40.467 8 - - - 8 -

Bacillus amyloliquefaciens LL3 Bacteria Terrabacteria group Firmicutes pMC1 NC_017189.1 CP002635 6.758 41.9503 5 - - - 5 -

Bacillus anthracis HYU01 Bacteria Terrabacteria group Firmicutes pX01 NZ_CP008847.1 CP008847 181.894 32.5354 159 - - - 171 12

Bacillus anthracis HYU01 Bacteria Terrabacteria group Firmicutes pX02 NZ_CP008848.1 CP008848 94.732 33.0501 86 - - - 93 7

Bacillus anthracis 2000031021 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP007617.1 CP007617 94.756 33.029 86 - - - 92 6

Bacillus anthracis Smith 1013 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CM002880.1 CM002880 97.502 33.1798 92 - - - 100 8

Bacillus anthracis BFV Bacteria Terrabacteria group Firmicutes unnamed_1 NZ_CP007702.1 CP007702 95.214 33.054 89 - - - 94 5

Bacillus anthracis BFV Bacteria Terrabacteria group Firmicutes unnamed_2 NZ_CP007703.1 CP007703 183.088 32.6974 155 - - - 171 16

Bacillus anthracis A0157 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP010343.1 CP010343 94.809 33.0475 89 - - - 94 5

Bacillus anthracis Ames A0462 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP010794.1 CP010794 94.838 33.0669 86 - - - 93 7

Bacillus anthracis Ames A0462 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP010793.1 CP010793 181.677 32.5297 159 - - - 170 11

Bacillus anthracis Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP010814.1 CP010814 181.682 32.5332 160 - - - 171 11

Bacillus anthracis Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP010815.1 CP010815 94.803 33.0454 90 - - - 95 5

Bacillus anthracis PAK-1 Bacteria Terrabacteria group Firmicutes 1 NZ_CP009324.1 CP009324 181.754 32.5319 156 - - - 168 12

Bacillus anthracis Vollum 1B Bacteria Terrabacteria group Firmicutes 2 NZ_CP009326.1 CP009326 94.892 33.0513 88 - - - 94 6

Bacillus anthracis Vollum 1B Bacteria Terrabacteria group Firmicutes 1 NZ_CP009327.1 CP009327 181.765 32.5343 160 - - - 171 11

Bacillus anthracis K3 Bacteria Terrabacteria group Firmicutes 2 NZ_CP009329.1 CP009329 94.803 33.0549 87 - - - 94 7

Bacillus anthracis K3 Bacteria Terrabacteria group Firmicutes 1 NZ_CP009330.1 CP009330 181.46 32.5372 156 - - - 172 16

Bacillus anthracis Ohio ACB Bacteria Terrabacteria group Firmicutes 2 NZ_CP009339.1 CP009339 94.797 33.0527 88 - - - 94 6

Bacillus anthracis Ohio ACB Bacteria Terrabacteria group Firmicutes 1 NZ_CP009340.1 CP009340 181.369 32.5149 156 - - - 170 14

Bacillus anthracis SK-102 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP009462.1 CP009462 94.884 33.0519 89 - - - 94 5

Bacillus anthracis SK-102 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009463.1 CP009463 180.693 32.5475 155 - - - 166 11

Bacillus anthracis Pasteur Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP009475.1 CP009475 94.721 33.0476 89 - - - 94 5

Bacillus anthracis BA1015 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009543.1 CP009543 181.707 32.521 159 - - - 171 12

Bacillus anthracis BA1015 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP009542.1 CP009542 94.807 33.0566 88 - - - 95 7

Bacillus anthracis BA1035 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP009698.1 CP009698 94.767 33.0442 83 - - - 92 9

Bacillus anthracis BA1035 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009699.1 CP009699 181.892 32.538 156 - - - 168 12

Bacillus anthracis RA3 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP009695.1 CP009695 94.74 33.0473 84 - - - 92 8

Bacillus anthracis RA3 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009696.1 CP009696 181.92 32.539 157 - - - 169 12

Bacillus anthracis 2002013094 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP009900.1 CP009900 94.747 33.0322 81 - - - 92 11

Bacillus anthracis 2002013094 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009901.1 CP009901 184.436 32.5538 159 - - - 173 14

Bacillus anthracis Ames_BA1004 Bacteria Terrabacteria group Firmicutes plasmid1 NZ_CP009980.1 CP009980 181.674 32.5302 157 - - - 169 12

Bacillus anthracis Ames_BA1004 Bacteria Terrabacteria group Firmicutes plasmid2 NZ_CP009979.1 CP009979 94.831 33.043 89 - - - 94 5

Bacillus anthracis Canadian Bison Bacteria Terrabacteria group Firmicutes 1 NZ_CP010321.1 CP010321 181.741 32.5353 158 - - - 171 13

Bacillus anthracis Canadian Bison Bacteria Terrabacteria group Firmicutes 2 NZ_CP010320.1 CP010320 94.81 33.0587 88 - - - 94 6

Bacillus anthracis A1144 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP010854.1 CP010854 95.135 33.0488 88 - - - 95 7

Bacillus anthracis A1144 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP010853.1 CP010853 181.663 32.5333 160 - - - 171 11

Bacillus anthracis A1075 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CM003249.1 CM003249 94.94 33.0577 86 - - - 95 9

Bacillus anthracis A1075 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CM003248.1 CM003248 182.638 32.5239 159 - - - 171 12

Bacillus anthracis Sterne Bacteria Terrabacteria group Firmicutes virulence plasmid PX01 NC_001496.1 AF065404 181.654 32.525 142 - - - 142 -

Bacillus anthracis Bacteria Terrabacteria group Firmicutes pXO2 NC_002146.1 AF188935 96.231 33.0787 84 - - - 84 -

Bacillus anthracis Larissa Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP012520.1 CP012520 181.658 32.5331 160 - - - 171 11

Bacillus anthracis Larissa Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP012521.1 CP012521 94.752 33.0452 90 - - - 95 5

Bacillus anthracis 3631_1C Bacteria Terrabacteria group Firmicutes pXO1 - CM003469.1 181.623 32.5383 159 - - - 170 11

Bacillus anthracis 20SD Bacteria Terrabacteria group Firmicutes pXO2 - CM003468.1 94.764 33.079 89 - - - 97 8

Bacillus anthracis 20SD Bacteria Terrabacteria group Firmicutes pXO1 - CM003467.1 181.362 32.5222 160 - - - 171 11

Bacillus anthracis Stendal Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP014177.1 CP014177 181.677 32.5292 159 - - - 170 11

Bacillus anthracis Stendal Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP014178.1 CP014178 94.83 33.0444 89 - - - 95 6

Bacillus anthracis 52-G Bacteria Terrabacteria group Firmicutes pXO1 NZ_CM002396.1 CM002396 181.673 32.5271 159 - - - 171 12

Bacillus anthracis 52-G Bacteria Terrabacteria group Firmicutes pXO2 NZ_CM002397.1 CM002397 94.805 33.0552 90 - - - 95 5

Bacillus anthracis 8903-G Bacteria Terrabacteria group Firmicutes pXO2 NZ_CM002403.1 CM002403 94.78 33.0544 89 - - - 94 5

Bacillus anthracis 8903-G Bacteria Terrabacteria group Firmicutes pXO1 NZ_CM002402.1 CM002402 181.673 32.5255 159 - - - 171 12

Bacillus anthracis 9080-G Bacteria Terrabacteria group Firmicutes pXO1 NZ_CM002399.1 CM002399 181.656 32.5285 158 - - - 171 13

Bacillus anthracis 9080-G Bacteria Terrabacteria group Firmicutes pXO2 NZ_CM002400.1 CM002400 94.815 33.0454 89 - - - 95 6

Bacillus anthracis str. 'Ames Ancestor' Bacteria Terrabacteria group Firmicutes pXO2 NC_007323.3 AE017335 94.83 33.0433 90 - - - 95 5

Bacillus anthracis str. 'Ames Ancestor' Bacteria Terrabacteria group Firmicutes pXO1 NC_007322.2 AE017336 181.677 32.5297 160 - - - 171 11

Bacillus anthracis str. 95014 Bacteria Terrabacteria group Firmicutes pXO1_95014 - JANG01000027.1 181.628 32.5368 204 - - - 204 -

Bacillus anthracis str. A0248 Bacteria Terrabacteria group Firmicutes pXO1 NC_012656.1 CP001599 181.677 32.5297 160 - - 2 173 11

Bacillus anthracis str. A0248 Bacteria Terrabacteria group Firmicutes pXO2 NC_012655.1 CP001597 94.83 33.0433 90 - - - 95 5

Bacillus anthracis str. A0389 Bacteria Terrabacteria group Firmicutes pXO2 NZ_ABLB01000068.1 ABLB01000068 94.8 33.0464 88 - - - 94 6

Bacillus anthracis str. A0389 Bacteria Terrabacteria group Firmicutes pXO1 NZ_ABLB01000067.1 ABLB01000067 181.197 32.5193 158 - - - 169 11

Bacillus anthracis str. A16 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP001971.1 CP001971 181.764 32.5317 158 - - - 171 13

Bacillus anthracis str. A16 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP001972.1 CP001972 94.839 33.0455 86 - - - 94 8

Bacillus anthracis str. A16R Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP001975.1 CP001975 181.763 32.5303 161 - - - 171 10

Bacillus anthracis str. A2012 Bacteria Terrabacteria group Firmicutes pXO2 - AE011191.1 94.829 33.0437 101 - - - 113 12

Bacillus anthracis str. A2012 Bacteria Terrabacteria group Firmicutes pXO1 - AE011190.1 181.677 32.5297 196 - - 4 221 21

Bacillus anthracis str. BF1 Bacteria Terrabacteria group Firmicutes pXO2 NZ_AMDT01000056.1 AMDT01000056 94.741 33.0427 83 - - - 92 9

Bacillus anthracis str. CDC 684 Bacteria Terrabacteria group Firmicutes pX01 NC_012579.1 CP001216 181.773 32.5312 161 - - 2 173 10

Bacillus anthracis str. CDC 684 Bacteria Terrabacteria group Firmicutes pX02 NC_012577.1 CP001214 94.875 33.053 89 - - - 94 5

Bacillus anthracis str. H9401 Bacteria Terrabacteria group Firmicutes BAP2 NC_017727.1 CP002093 94.824 33.0539 88 - - - 94 6

Bacillus anthracis str. H9401 Bacteria Terrabacteria group Firmicutes BAP1 NC_017726.1 CP002092 181.7 32.5305 157 - - - 171 14

Bacillus anthracis str. Sterne Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009540.1 CP009540 181.624 32.5309 154 - - - 168 14

Bacillus anthracis str. SVA11 Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP006743.1 CP006743 181.793 32.537 158 - - - 169 11

Bacillus anthracis str. SVA11 Bacteria Terrabacteria group Firmicutes pXO2 NZ_CP006744.1 CP006744 94.758 33.0473 82 - - - 92 10

Bacillus anthracis str. Turkey32 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP009314.1 CP009314 94.807 33.0566 87 - - - 93 6

Bacillus anthracis str. Turkey32 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP009316.1 CP009316 181.76 32.5286 157 - - - 169 12

Bacillus anthracis str. V770-NP-1R Bacteria Terrabacteria group Firmicutes pXO1 NZ_CP009597.1 CP009597 181.71 32.5194 159 - - - 170 11

Bacillus anthracis str. Vollum Bacteria Terrabacteria group Firmicutes unnamed_2 NZ_CP007665.1 CP007665 181.831 32.5319 154 - - - 170 16

Bacillus anthracis str. Vollum Bacteria Terrabacteria group Firmicutes unnamed_1 NZ_CP007664.1 CP007664 94.889 33.0523 87 - - - 95 8

Bacillus aryabhattai C765 Bacteria Terrabacteria group Firmicutes pBa1 NZ_CM003163.1 CM003163 10.154 35.0601 12 - - - 12 -

Bacillus bombysepticus str. Wang Bacteria Terrabacteria group Firmicutes pBb NZ_CP007513.1 CP007513 577.809 32.0149 409 - 1 - 455 45

Bacillus cereus 03BB87 Bacteria Terrabacteria group Firmicutes pBCN NZ_CP009939.1 CP009939 52.166 36.4797 70 - - - 71 1

Bacillus cereus 03BB87 Bacteria Terrabacteria group Firmicutes pBCX01 NZ_CP009940.1 CP009940 209.381 31.7211 152 - - - 176 24

Bacillus cereus FM1 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP009368.1 CP009368 402.605 32.5629 279 - - - 312 33

Bacillus cereus 3a Bacteria Terrabacteria group Firmicutes pBFC_3 NZ_CP009595.1 CP009595 312.478 32.7005 263 - - - 277 14

Bacillus cereus 3a Bacteria Terrabacteria group Firmicutes pBFC_2 NZ_CP009594.1 CP009594 51.531 36.578 71 - - - 72 1

Bacillus cereus 3a Bacteria Terrabacteria group Firmicutes pBFC_1 NZ_CP009593.1 CP009593 7.3 35.7123 10 - - - 10 -

Bacillus cereus S2-8 Bacteria Terrabacteria group Firmicutes pBFR_1 NZ_CP009604.1 CP009604 7.3 35.7123 10 - - - 10 -

Bacillus cereus S2-8 Bacteria Terrabacteria group Firmicutes pBFR_3 NZ_CP009603.1 CP009603 51.512 36.5779 71 - - - 72 1

Bacillus cereus S2-8 Bacteria Terrabacteria group Firmicutes pBFR_2 NZ_CP009606.1 CP009606 312.478 32.7005 263 - - - 277 14

Bacillus cereus G9241 Bacteria Terrabacteria group Firmicutes pBC210 NC_010933.1 DQ889679 209.385 31.72 - - - - - -

Bacillus cereus VPC1401 Bacteria Terrabacteria group Firmicutes pLVP1401 NC_014757.1 FR675941 56.149 31.1493 65 - - - 65 -

Bacillus cereus Tim-r01 Bacteria Terrabacteria group Firmicutes pBC-Tim NC_025012.1 AB083655 8.983 28.0085 6 - - - 6 -

Bacillus cereus AH187 Bacteria Terrabacteria group Firmicutes pCER270 NC_010924.1 DQ889676 270.082 34.1574 235 - - - 250 15

Bacillus cereus G9241 Bacteria Terrabacteria group Firmicutes pBCXO1 NC_010934.1 DQ889680 190.861 32.6342 - - - - - -

Bacillus cereus Bacteria Terrabacteria group Firmicutes pBC16 NC_001705.1 U32369 4.63 34.2117 3 - - - 3 -

Bacillus cereus NJ-W Bacteria Terrabacteria group Firmicutes plasmid-32 NZ_CP012485.1 CP012485 11.744 28.951 12 - - - 14 2

Bacillus cereus NJ-W Bacteria Terrabacteria group Firmicutes plasmid-35-36 NZ_CP012484.1 CP012484 9.032 29.7941 8 - - - 9 1

Bacillus cereus NJ-W Bacteria Terrabacteria group Firmicutes plasmid-37 NZ_CP012486.1 CP012486 7.703 35.7134 9 - - - 10 1

Bacillus cereus FORC_013 Bacteria Terrabacteria group Firmicutes pFORC13 NZ_CP011146.1 CP011146 259.749 32.9926 168 - - - 217 49

Bacillus cereus 03BB102 Bacteria Terrabacteria group Firmicutes p03BB102_179 NC_012473.1 CP001406 179.68 32.1689 152 - - - 165 13

Bacillus cereus 03BB102 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP009317.1 CP009317 179.68 32.1689 151 - - - 164 13

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_4 NZ_CP009638.1 CP009638 61.862 35.458 74 - - - 76 2

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_2 NZ_CP009636.1 CP009636 238.933 31.9006 187 - 1 - 198 10

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_1 NZ_CP009639.1 CP009639 281.957 30.7717 295 - - - 307 12

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_3 NZ_CP009640.1 CP009640 85.879 32.5074 91 - - - 93 2

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_6 NZ_CP009635.1 CP009635 9.797 31.7954 6 - - - 6 -

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_7 NZ_CP009634.1 CP009634 4.898 32.9522 7 - - - 7 -

Bacillus cereus 03BB108 Bacteria Terrabacteria group Firmicutes pBFI_5 NZ_CP009637.1 CP009637 42.47 36.0843 58 - - - 58 -

Bacillus cereus AH187 Bacteria Terrabacteria group Firmicutes pAH187_270 NC_011655.1 CP001179 270.082 34.1574 224 - - 4 239 11

Bacillus cereus AH187 Bacteria Terrabacteria group Firmicutes pAH187_12 NC_011654.1 CP001178 12.481 31.0632 19 - - - 19 -

Bacillus cereus AH187 Bacteria Terrabacteria group Firmicutes pAH187_3 NC_011657.1 CP001181 3.091 34.9078 2 - - - 2 -

Bacillus cereus AH187 Bacteria Terrabacteria group Firmicutes pAH187_45 NC_011656.1 CP001180 45.173 35.457 54 - - - 55 1

Bacillus cereus AH820 Bacteria Terrabacteria group Firmicutes pAH820_272 NC_011777.1 CP001285 272.145 33.6394 260 - - - 275 15

Bacillus cereus AH820 Bacteria Terrabacteria group Firmicutes pAH820_3 NC_011776.1 CP001284 3.091 34.9401 2 - - - 2 -

Bacillus cereus AH820 Bacteria Terrabacteria group Firmicutes pAH820_10 NC_011771.1 CP001286 10.915 33.6143 10 - - - 13 3

Bacillus cereus ATCC 10987 Bacteria Terrabacteria group Firmicutes pBc10987 NC_005707.1 AE017195 208.369 33.4426 198 - - - 206 8

Bacillus cereus ATCC 14579 Bacteria Terrabacteria group Firmicutes pBClin15 NC_004721.2 AE016878 15.274 38.0254 21 - - - 21 -

Bacillus cereus ATCC 4342 Bacteria Terrabacteria group Firmicutes pBGM NZ_CP009627.1 CP009627 36.802 30.7456 31 - 1 - 33 1

Bacillus cereus biovar anthracis str. CI Bacteria Terrabacteria group Firmicutes pCI-XO2 NC_014332.1 CP001748 94.469 33.0902 86 - - 1 94 7

Bacillus cereus biovar anthracis str. CI Bacteria Terrabacteria group Firmicutes pBAslCI14 NC_014333.1 CP001749 14.219 37.907 16 - - 2 18 -

Bacillus cereus biovar anthracis str. CI Bacteria Terrabacteria group Firmicutes pCI-XO1 NC_014331.1 CP001747 181.907 32.5386 160 - - 3 173 10

Bacillus cereus D17 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP009299.1 CP009299 210.673 33.1737 203 - - - 212 9

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pE33L466 NC_007103.1 CP000040 466.37 33.1222 376 - - - 439 63

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pE33L54 NC_007105.1 CP000042 53.501 31.9452 43 - - - 54 11

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pE33L9 NC_007107.1 CP000044 9.15 31.0055 9 - - - 9 -

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pE33L8 NC_007106.1 CP000043 8.191 31.9009 8 - - - 8 -

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pE33L5 NC_007104.1 CP000041 5.108 30.8927 6 - - - 6 -

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pBCO_4 NZ_CP009970.1 CP009970 7.863 31.502 8 - - - 8 -

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pBCO_1 NZ_CP009967.1 CP009967 465.97 33.1208 373 - - - 441 68

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pBCO_2 NZ_CP009966.1 CP009966 53.501 31.9452 43 - - - 54 11

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pBCO_5 NZ_CP009965.1 CP009965 4.983 30.8248 5 - - - 5 -

Bacillus cereus E33L Bacteria Terrabacteria group Firmicutes pBCO_3 NZ_CP009969.1 CP009969 9.146 31.0081 9 - - - 9 -

Bacillus cereus F837/76 Bacteria Terrabacteria group Firmicutes pF837_10 NC_016780.1 CP003189 10.288 31.0848 8 - - - 9 1

Bacillus cereus F837/76 Bacteria Terrabacteria group Firmicutes pF837_55 NC_016794.1 CP003188 55.304 36.1891 63 - - - 66 3

Bacillus cereus FRI-35 Bacteria Terrabacteria group Firmicutes p04 NC_018494.1 CP003751 3.091 34.9078 2 - - - 2 -

Bacillus cereus FRI-35 Bacteria Terrabacteria group Firmicutes p03 NC_018499.1 CP003750 36.273 30.7198 30 - 1 - 32 1

Bacillus cereus FRI-35 Bacteria Terrabacteria group Firmicutes p01 NC_018492.1 CP003748 218.786 33.4135 198 - - - 202 4

Bacillus cereus FRI-35 Bacteria Terrabacteria group Firmicutes p02 NC_018493.1 CP003749 40.993 32.5177 42 - - - 42 -

Bacillus cereus G9241 Bacteria Terrabacteria group Firmicutes pBCX01 NZ_CP009592.1 CP009592 190.86 32.6333 160 - - - 172 12

Bacillus cereus G9241 Bacteria Terrabacteria group Firmicutes pBFH_1 NZ_CP009589.1 CP009589 52.166 36.4797 70 - - - 71 1

Bacillus cereus G9241 Bacteria Terrabacteria group Firmicutes pBC210 NZ_CP009591.1 CP009591 209.255 31.7245 153 - - - 176 23

Bacillus cereus G9842 Bacteria Terrabacteria group Firmicutes pG9842_209 NC_011775.1 CP001187 209.488 30.0313 226 - - - 230 4

Bacillus cereus G9842 Bacteria Terrabacteria group Firmicutes pG9842_140 NC_011774.1 CP001188 140.001 32.9005 107 - 2 - 110 1

Bacillus cereus H3081.97 Bacteria Terrabacteria group Firmicutes pH308197_3 NC_011338.1 CP001171 3.424 34.5794 2 - - - 2 -

Bacillus cereus H3081.97 Bacteria Terrabacteria group Firmicutes pH308197_10 NC_011341.1 CP001168 10.077 30.1479 10 - - - 11 1

Bacillus cereus H3081.97 Bacteria Terrabacteria group Firmicutes pH308197_11 NC_011340.1 CP001167 11.567 32.9472 14 - - - 14 -

Bacillus cereus H3081.97 Bacteria Terrabacteria group Firmicutes pH308197_29 NC_011342.1 CP001169 29.189 32.3341 34 - - - 34 -

Bacillus cereus H3081.97 Bacteria Terrabacteria group Firmicutes pH308197_73 NC_011337.1 CP001170 72.792 30.1833 88 - - - 90 2

Bacillus cereus H3081.97 Bacteria Terrabacteria group Firmicutes pH308197_258 NC_011339.1 CP001166 258.484 34.1398 213 - - - 224 11

Bacillus cereus NC7401 Bacteria Terrabacteria group Firmicutes pNC4 NC_016774.1 AP007214 3.091 34.9078 2 - - - 2 -

Bacillus cereus NC7401 Bacteria Terrabacteria group Firmicutes pNC3 NC_016793.1 AP007213 3.869 34.6601 6 - - - 6 -

Bacillus cereus NC7401 Bacteria Terrabacteria group Firmicutes pNC1 NC_016772.1 AP007211 47.972 36.5359 66 - - - 67 1

Bacillus cereus NC7401 Bacteria Terrabacteria group Firmicutes pNCcld NC_016792.1 AP007210 270.082 34.1578 224 - - - 235 11

Bacillus cereus NC7401 Bacteria Terrabacteria group Firmicutes pNC2 NC_016773.1 AP007212 5.436 34.1428 7 - - - 8 1

Bacillus cereus Q1 Bacteria Terrabacteria group Firmicutes pBc239 NC_011973.1 CP000228 239.246 33.4948 206 - - - 215 9

Bacillus cereus Q1 Bacteria Terrabacteria group Firmicutes pBc53 NC_011971.1 CP000229 52.766 35.0832 66 - - - 67 1

Bacillus clausii ENTPro Bacteria Terrabacteria group Firmicutes unnamed NZ_CP012476.1 CP012476 31.475 39.911 32 - - - 35 3

Bacillus coagulans P4-102B Bacteria Terrabacteria group Firmicutes pMSR0 NC_010853.1 EF015591 6.823 36.9486 9 - - - 9 -

Bacillus cytotoxicus NVH 391-98 Bacteria Terrabacteria group Firmicutes pBC9801 NC_009673.1 CP000765 7.135 30.2593 9 - - - 10 1

Bacillus intermedius Bacteria Terrabacteria group Firmicutes pET3xa-barn36 NC_025174.1 AJ006407 4.753 52.9771 1 - - - 1 -

Bacillus licheniformis FL5 Bacteria Terrabacteria group Firmicutes pFL5 NC_005311.1 AJ577854 9.15 40.9727 11 - - - 11 -

Bacillus licheniformis FL7 Bacteria Terrabacteria group Firmicutes pFL7 NC_011396.1 AJ495760 1.661 42.3841 1 - - - 1 -

Bacillus licheniformis 63.1 Bacteria Terrabacteria group Firmicutes pBL63.1 NC_006959.1 AJ748844 3.649 34.9959 2 - - - 2 -

Bacillus licheniformis FL7 Bacteria Terrabacteria group Firmicutes pFL7 NC_005308.1 AJ577855 7.853 43.5884 8 - - - 8 -

Bacillus megaterium NBRC 15308 = ATCC 14581 Bacteria Terrabacteria group Firmicutes pBMV_4 NZ_CP009918.1 CP009918 10.61 33.5815 12 - - - 12 -

Bacillus megaterium NBRC 15308 = ATCC 14581 Bacteria Terrabacteria group Firmicutes pBMV_2 NZ_CP009921.1 CP009921 301.264 34.5395 299 - 1 - 313 13

Bacillus megaterium NBRC 15308 = ATCC 14581 Bacteria Terrabacteria group Firmicutes pBMV_6 NZ_CP009917.1 CP009917 2.048 35.4492 1 - - - 1 -

Bacillus megaterium NBRC 15308 = ATCC 14581 Bacteria Terrabacteria group Firmicutes pBMV_5 NZ_CP009916.1 CP009916 3.767 35.9703 3 - - - 3 -

Bacillus megaterium NBRC 15308 = ATCC 14581 Bacteria Terrabacteria group Firmicutes pBMV_3 NZ_CP009915.1 CP009915 11.065 35.1017 9 - - - 9 -

Bacillus megaterium NBRC 15308 = ATCC 14581 Bacteria Terrabacteria group Firmicutes pBMV_1 NZ_CP009919.1 CP009919 74.772 34.6547 58 - - - 61 3

Bacillus megaterium Q3 Bacteria Terrabacteria group Firmicutes p1 NZ_CP010587.1 CP010587 76.26 36.4201 55 3 17 - 80 5

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM500 NC_014025.1 CP001988 66.985 33.9106 68 - - - 68 -

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM600 NC_014031.1 CP001989 99.694 32.9719 82 - - - 85 3

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM700 NC_014023.1 CP001990 164.406 33.4854 153 - 1 - 158 4

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM100 NC_010008.2 CP001984 5.428 34.8379 6 - - - 7 1

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM300 NC_010010.2 CP001986 26.587 35.4986 22 - - - 23 1

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM200 NC_010009.2 CP001985 9.098 34.5021 8 - - - 8 -

Bacillus megaterium QM B1551 Bacteria Terrabacteria group Firmicutes pBM400 NC_004604.2 CP001987 53.865 36.4708 46 3 18 - 68 1

Bacillus megaterium WSH-002 Bacteria Terrabacteria group Firmicutes WSH-002_p2 NC_017140.1 CP003019 9.699 32.2198 9 - - - 10 1

Bacillus megaterium WSH-002 Bacteria Terrabacteria group Firmicutes WSH-002_p3 NC_017141.1 CP003020 7.006 33.2144 9 - - - 9 -

Bacillus megaterium WSH-002 Bacteria Terrabacteria group Firmicutes WSH-002_p1 NC_017139.1 CP003018 74.613 35.9991 58 3 17 - 80 2

Bacillus methanolicus MGA3 Bacteria Terrabacteria group Firmicutes pBM19 NC_005328.1 AY386314 19.167 36.6933 15 - - - 15 -

Bacillus methanolicus MGA3 Bacteria Terrabacteria group Firmicutes pBM69 NZ_ADWW01000012.1 ADWW01000012 68.997 35.8045 63 - - - 70 7

Bacillus methanolicus MGA3 Bacteria Terrabacteria group Firmicutes pBM19 NZ_ADWW01000011.1 ADWW01000011 19.169 36.6842 16 - - - 17 1

Bacillus methanolicus MGA3 Bacteria Terrabacteria group Firmicutes pBM19 NZ_CP007741.1 CP007741 19.174 36.6851 16 - - - 17 1

Bacillus methanolicus MGA3 Bacteria Terrabacteria group Firmicutes pBM69 NZ_CP007740.1 CP007740 68.999 35.8049 65 - - - 72 7

Bacillus methanolicus PB1 Bacteria Terrabacteria group Firmicutes pBM20 NZ_AFEU01000007.1 AFEU01000007 20.187 36.5929 16 - - - 18 2

Bacillus mycoides 219298 Bacteria Terrabacteria group Firmicutes unnamed_1 NZ_CP007621.1 CP007621 4.602 33.7462 5 - - - 6 1

Bacillus mycoides 219298 Bacteria Terrabacteria group Firmicutes unnamed_4 NZ_CP007624.1 CP007624 140.69 33.9925 109 - 4 - 127 14

Bacillus mycoides 219298 Bacteria Terrabacteria group Firmicutes unnamed_5 NZ_CP007625.1 CP007625 285.163 33.3553 256 - - - 286 30

Bacillus mycoides 219298 Bacteria Terrabacteria group Firmicutes unnamed_2 NZ_CP007622.1 CP007622 4.92 33.0488 5 - - - 6 1

Bacillus mycoides 219298 Bacteria Terrabacteria group Firmicutes unnamed_3 NZ_CP007623.1 CP007623 11.903 32.4876 10 - - - 12 2

Bacillus mycoides ATCC 6462 Bacteria Terrabacteria group Firmicutes pBMX_2 NZ_CP009690.1 CP009690 10.361 31.3966 12 - - - 13 1

Bacillus mycoides ATCC 6462 Bacteria Terrabacteria group Firmicutes pBMX_3 NZ_CP009689.1 CP009689 9.935 32.6422 12 - - - 12 -

Bacillus mycoides ATCC 6462 Bacteria Terrabacteria group Firmicutes pBMX_1 NZ_CP009691.1 CP009691 360.889 33.9248 318 - - - 354 36

Bacillus mycoides Bacteria Terrabacteria group Firmicutes pSin9.7 NC_006869.1 AJ871637 9.698 32.3984 7 - - - 7 -

Bacillus mycoides DX Bacteria Terrabacteria group Firmicutes pBMYdx NC_005704.1 AJ272266 3.377 35.3568 2 - - - 2 -

Bacillus mycoides Bacteria Terrabacteria group Firmicutes pDx14.2 NC_006870.1 AJ871638 14.218 29.4838 14 - - - 14 -

Bacillus mycoides sin96 Bacteria Terrabacteria group Firmicutes pBMY1 NC_005703.1 AJ243967 3.476 35.3567 1 - - - 1 -

Bacillus paralicheniformis G-1 Bacteria Terrabacteria group Firmicutes pFL7 NZ_AZSK01000037.1 AZSK01000037 7.932 43.4443 8 - - - 8 -

Bacillus pseudofirmus OF4 Bacteria Terrabacteria group Firmicutes pBpOF4-02 NC_013793.1 CP001880 105.029 35.455 102 - 2 - 105 1

Bacillus pseudofirmus OF4 Bacteria Terrabacteria group Firmicutes pBpOF4-01 NC_013792.1 CP001879 285.222 35.979 258 - - - 265 7

Bacillus pumilus GR-8 Bacteria Terrabacteria group Firmicutes pGR8 NZ_CP009109.1 CP009109 6.935 36.8421 7 - - - 7 -

Bacillus pumilus ZZ84 Bacteria Terrabacteria group Firmicutes pPZZ84 NC_013534.1 GU144016 6.817 36.7904 7 - - - 7 -

Bacillus pumilus ATCC 12140 Bacteria Terrabacteria group Firmicutes pPL10 NC_001858.1 AF036712 7.028 36.881 6 - - - 6 -

Bacillus pumilus ATCC 7065 Bacteria Terrabacteria group Firmicutes pPL7065 NC_004932.1 AY230134 7.607 36.7688 6 - - - 6 -

Bacillus pumilus SH-B9 Bacteria Terrabacteria group Firmicutes pSHB9 NZ_CP011023.1 CP011023 91.229 35.6882 103 - - - 104 1

Bacillus safensis MCCC 1A08385 Bacteria Terrabacteria group Firmicutes pBA64 NC_025135.1 JX134061 5.96 37.4329 5 - - - 5 -

Bacillus simplex Bacteria Terrabacteria group Firmicutes pSHB26 NZ_CP011009.1 CP011009 176.219 36.3746 149 3 - - 160 8

Bacillus smithii DSM 4216 Bacteria Terrabacteria group Firmicutes pDSM4216 NZ_CP012025.1 CP012025 12.514 35.9038 16 - - - 16 -

Bacillus sp. 24 Bacteria Terrabacteria group Firmicutes pBHS24 NC_019230.1 HM235948 5.031 36.7521 4 - - - 4 -

Bacillus sp. B-3 Bacteria Terrabacteria group Firmicutes pA01 NC_002675.1 AB040121 3.325 39.4286 2 - - - 2 -

Bacillus sp. BS-01 Bacteria Terrabacteria group Firmicutes pBS-01 NC_013963.1 GU591497 16.492 33.4283 4 - - - 4 -

Bacillus sp. BS-02 Bacteria Terrabacteria group Firmicutes pBS-02 NC_014557.1 HQ128580 16.543 31.8382 7 - - - 7 -

Bacillus sp. DMV2 Bacteria Terrabacteria group Firmicutes pDMV2 NC_019282.1 JN980137 5.031 36.772 4 - - - 4 -

Bacillus sp. JAMB750 Bacteria Terrabacteria group Firmicutes pJAM1 NC_014617.1 AB125215 4.892 32.3181 1 - - - 1 -

Bacillus sp. YP1 Bacteria Terrabacteria group Firmicutes pBUYP1 NZ_CP010015.1 CP010015 83.186 35.0888 93 - 2 - 95 -

Bacillus stratosphericus LAMA 585 Bacteria Terrabacteria group Firmicutes pBSt1 NZ_APAS01000019.1 APAS01000019 7.671 34.7803 7 - - - 7 -

Bacillus subtilis IF03022 Bacteria Terrabacteria group Firmicutes pTA1060 NC_001766.1 U32380 8.737 38.068 8 - - - 8 -

Bacillus subtilis Bacteria Terrabacteria group Firmicutes p1414 NC_002075.1 AF091592 7.949 38.3067 13 - - - 13 -

Bacillus subtilis Bacteria Terrabacteria group Firmicutes pIM13 NC_001376.1 M13761 2.246 31.1665 2 - - - 2 -

Bacillus subtilis ATCC 15841 Bacteria Terrabacteria group Firmicutes pPL1 NC_013537.1 DQ140187 6.704 39.9911 5 - - - 5 -

Bacillus subtilis NCIB 3610 Bacteria Terrabacteria group Firmicutes pBS32 NC_021809.1 KF365913 84.215 35.1149 102 - - - 102 -

Bacillus subtilis IAM1028 Bacteria Terrabacteria group Firmicutes pTA1015 NC_001765.1 U32379 5.807 40.6923 5 - - - 5 -

Bacillus subtilis IAM 11631 Bacteria Terrabacteria group Firmicutes pLS32 NC_015149.1 AB615353 85.603 35.1378 104 - 2 - 106 -

Bacillus subtilis Bacteria Terrabacteria group Firmicutes pBS608 NC_006825.1 AY836798 6.611 39.2679 7 - - - 7 -

Bacillus subtilis Bacteria Terrabacteria group Firmicutes pLS30 NC_007956.1 AB243053 6.61 39.3041 5 - - - 5 -

Bacillus subtilis IAM1232 Bacteria Terrabacteria group Firmicutes pTA1040 NC_001764.1 U32378 7.837 36.9019 7 - - - 7 -

Bacillus subtilis IFO 3335 Bacteria Terrabacteria group Firmicutes pLS20 NC_015148.1 AB615352 65.774 37.7657 108 - - - 108 -

Bacillus subtilis S1-4 Bacteria Terrabacteria group Firmicutes pSU01 NZ_ANIP01000001.1 ANIP01000001 6.609 39.2949 5 - - - 5 -

Bacillus subtilis subsp. natto CGMCC 2108 Bacteria Terrabacteria group Firmicutes unnamed1 NZ_CP014472.1 CP014472 5.82 40.8591 5 - - - 6 1

Bacillus subtilis subsp. natto CGMCC 2108 Bacteria Terrabacteria group Firmicutes unnamed2 NZ_CP014473.1 CP014473 65.774 37.7626 82 - - - 83 1

Bacillus subtilis subsp. natto BEST195 Bacteria Terrabacteria group Firmicutes pBEST195S NC_017194.1 AP011542 5.838 40.7503 5 - - - 5 -

Bacillus thuringiensis HD1011 Bacteria Terrabacteria group Firmicutes 3 NZ_CP009332.1 CP009332 82.34 33.9094 87 - - - 88 1

Bacillus thuringiensis HD1011 Bacteria Terrabacteria group Firmicutes 2 NZ_CP009334.1 CP009334 349.601 33.3517 433 - - - 434 1

Bacillus thuringiensis HD1011 Bacteria Terrabacteria group Firmicutes 1 NZ_CP009336.1 CP009336 358.965 32.533 197 - - - 215 18

Bacillus thuringiensis HD1011 Bacteria Terrabacteria group Firmicutes 4 NZ_CP009333.1 CP009333 69.773 32.5498 79 - - - 79 -

Bacillus thuringiensis HD571 Bacteria Terrabacteria group Firmicutes pBFQ NZ_CP009599.1 CP009599 55.939 36.1519 71 - - - 72 1

Bacillus thuringiensis HD682 Bacteria Terrabacteria group Firmicutes pBGN_2 NZ_CP009718.1 CP009718 56.203 34.9625 71 - - - 72 1

Bacillus thuringiensis HD682 Bacteria Terrabacteria group Firmicutes pBGN_1 NZ_CP009719.1 CP009719 14.648 30.2157 14 - - - 16 2

Bacillus thuringiensis HD682 Bacteria Terrabacteria group Firmicutes pBGN_3 NZ_CP009717.1 CP009717 7.243 36.2557 8 - - - 8 -

Bacillus thuringiensis 97-27 Bacteria Terrabacteria group Firmicutes unnamed NZ_CP010087.1 CP010087 76.848 32.6124 83 - - - 83 -

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC11 NZ_CP011356.1 CP011356 7.129 29.2608 7 - - - 9 2

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC6 NZ_CP011354.1 CP011354 8.511 30.7954 9 - - - 9 -

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC2226 NZ_CP011358.1 CP011358 82.3 32.1835 82 - - - 89 7

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC4 NZ_CP011352.1 CP011352 46.634 35.4355 66 - - - 66 -

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC20 NZ_CP011357.1 CP011357 90.519 31.0664 90 - - - 100 10

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC10 NZ_CP011355.1 CP011355 14.894 38.3577 20 - - - 20 -

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC1 NZ_CP011350.1 CP011350 761.374 32.8616 582 - 1 - 629 46

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC5 NZ_CP011353.1 CP011353 17.063 31.2958 11 - - - 11 -

Bacillus thuringiensis YC-10 Bacteria Terrabacteria group Firmicutes pYC3 NZ_CP011351.1 CP011351 80.704 33.4965 78 - - - 82 4

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-7 NZ_CP012106.1 CP012106 4.669 37.0743 7 - - - 7 -

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-9 NZ_CP012108.1 CP012108 7.386 32.2908 4 - - - 5 1

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-2 NZ_CP012101.1 CP012101 337.579 33.2461 237 - - - 304 67

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-5 NZ_CP012104.1 CP012104 42.726 36.1817 55 - - - 61 6

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-3 NZ_CP012102.1 CP012102 92.085 31.0593 82 - - - 91 9

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-4 NZ_CP012103.1 CP012103 94.695 33.5414 79 - - - 87 8

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-1 NZ_CP012100.1 CP012100 509.17 32.7101 418 - - - 451 33

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-6 NZ_CP012105.1 CP012105 14.336 36.1677 11 - - - 12 1

Bacillus thuringiensis HS18-1 Bacteria Terrabacteria group Firmicutes pHS18-8 NZ_CP012107.1 CP012107 8.287 28.4904 6 - - - 7 1

Bacillus thuringiensis 1-3 Bacteria Terrabacteria group Firmicutes pBt1-3 NC_020884.1 JQ696952 11.363 31.4882 19 - - - 19 -

Bacillus thuringiensis YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB9741 NC_001272.2 AF202532 6.578 32.3655 2 - - - 2 -

Bacillus thuringiensis YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB7635 NC_011796.1 EU130936 7.635 32.2069 9 - - - 9 -

Bacillus thuringiensis H32 Bacteria Terrabacteria group Firmicutes pBMB2062-32 NC_017197.1 DQ185142 2.062 34.8206 2 - - - 2 -

Bacillus thuringiensis C002 Bacteria Terrabacteria group Firmicutes pDAN-involved NC_007203.1 AY126018 6.909 32.1175 12 - - - 12 -

Bacillus thuringiensis H2 Bacteria Terrabacteria group Firmicutes pBMB2062-2 NC_019228.1 DQ185140 2.062 34.8691 2 - - - 2 -

Bacillus thuringiensis INTA 14-4 Bacteria Terrabacteria group Firmicutes pBMBt1 NC_006821.1 AY822042 6.7 32.4328 3 - - - 3 -

Bacillus thuringiensis H4ac Bacteria Terrabacteria group Firmicutes pBMB2062-4ac NC_017213.1 DQ185143 2.061 34.8375 2 - - - 2 -

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pTX14-1 NC_002091.1 U67921 5.415 36.325 3 - - - 3 -

Bacillus thuringiensis YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB2062 NC_002108.1 AF050161 2.062 34.8206 2 - - - 2 -

Bacillus thuringiensis LBIT-113 Bacteria Terrabacteria group Firmicutes pUIBI-1 NC_004059.1 AF516904 4.671 32.1987 4 - - - 4 -

Bacillus thuringiensis 4Q2 Bacteria Terrabacteria group Firmicutes pTX14-2 NC_004334.1 AY138808 6.829 36.0375 3 - - - 3 -

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes - NC_007202.1 S49203 2.058 34.8882 1 - - - 1 -

Bacillus thuringiensis H56 Bacteria Terrabacteria group Firmicutes pBMB2062-56 NC_019227.1 DQ185139 2.062 34.8691 2 - - - 2 -

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pBtoxis NC_010076.1 AL731825 127.923 32.4156 113 - - - 124 11

Bacillus thuringiensis INTA-FR7-4 Bacteria Terrabacteria group Firmicutes pFR12 NC_010281.1 EU362917 12.095 31.2112 11 - - - 11 -

Bacillus thuringiensis INTA-FR7-4 Bacteria Terrabacteria group Firmicutes pFR55 NC_010283.1 EU362919 55.712 33.7001 69 - - - 69 -

Bacillus thuringiensis H1.1 Bacteria Terrabacteria group Firmicutes pGI1 NC_004335.1 AY138809 8.254 32.4328 5 - - - 5 -

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pGI3 NC_005567.1 Y11173 11.365 31.6586 11 - - - 11 -

Bacillus thuringiensis INTA-FR7-4 Bacteria Terrabacteria group Firmicutes pFR12.5 NC_010282.1 EU362918 12.459 29.4406 14 - - - 14 -

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pBMB175 NC_010895.1 DQ364061 14.841 31.0289 13 - - - 13 -

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pBMB67 NC_009841.1 DQ363750 67.159 32.4335 73 - - - 73 -

Bacillus thuringiensis K1 Bacteria Terrabacteria group Firmicutes pK1S1 NC_009034.1 EF406356 5.475 32.8402 7 - - - 7 -

Bacillus thuringiensis ssp.israelensis, serotype HI4 Bacteria Terrabacteria group Firmicutes pTX14-3 NC_001446.1 X56204 7.649 35.168 2 - - - 2 -

Bacillus thuringiensis XL6 Bacteria Terrabacteria group Firmicutes unnamed - CP013001.1 393.62 30.9519 313 - - - 353 40

Bacillus thuringiensis YWC2-8 Bacteria Terrabacteria group Firmicutes pYWC2-8-1 NZ_CP013056.1 CP013056 250.706 33.4886 217 - - - 228 11

Bacillus thuringiensis YWC2-8 Bacteria Terrabacteria group Firmicutes pYWC2-8-2 NZ_CP013057.1 CP013057 84.491 32.2164 86 - - - 91 5

Bacillus thuringiensis YWC2-8 Bacteria Terrabacteria group Firmicutes pYWC2-8-5 NZ_CP013060.1 CP013060 46.634 35.4355 66 - - - 66 -

Bacillus thuringiensis YWC2-8 Bacteria Terrabacteria group Firmicutes pYWC2-8-3 NZ_CP013058.1 CP013058 82.531 30.9847 92 - - - 93 1

Bacillus thuringiensis YWC2-8 Bacteria Terrabacteria group Firmicutes pYWC2-8-4 NZ_CP013059.1 CP013059 80.699 33.4986 79 - - - 82 3

Bacillus thuringiensis YWC2-8 Bacteria Terrabacteria group Firmicutes pYWC2-8-6 NZ_CP013061.1 CP013061 8.512 30.7918 9 - - - 9 -

Bacillus thuringiensis CTC Bacteria Terrabacteria group Firmicutes unnamed NZ_CP013273.1 CP013273 25.529 34.8897 38 - - - 42 4

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850046 NZ_CP014289.1 CP014289 46.165 31.1643 14 - - - 14 -

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850012 NZ_CP014288.1 CP014288 12.487 31.9853 11 - - - 12 1

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850636 NZ_CP014283.1 CP014283 635.508 32.0619 452 - 1 - 504 51

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850055 NZ_CP014285.1 CP014285 55.372 35.5685 78 - - - 82 4

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850007 NZ_CP014290.1 CP014290 7.486 33.4357 8 - - - 8 -

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850054 NZ_CP014286.1 CP014286 54.205 34.7348 71 - - - 72 1

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850042 NZ_CP014287.1 CP014287 41.937 35.2958 54 - - - 54 -

Bacillus thuringiensis Bt185 Bacteria Terrabacteria group Firmicutes pBT1850294 NZ_CP014284.1 CP014284 293.705 32.6862 225 - - - 255 30

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pHD120112 NZ_CP014851.1 CP014851 112.429 32.9719 107 - - - 115 8

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pHD120038 NZ_CP014849.1 CP014849 38.333 35.056 40 - 1 - 50 9

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pHD120345 NZ_CP014853.1 CP014853 345.196 33.0656 220 - - - 260 40

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pHD120017 NZ_CP014848.1 CP014848 17.228 32.8767 25 - - - 26 1

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pHD120039 NZ_CP014850.1 CP014850 39.023 35.0819 49 - - - 52 3

Bacillus thuringiensis Bacteria Terrabacteria group Firmicutes pHD120161 NZ_CP014852.1 CP014852 161.353 33.7378 158 - - - 178 20

Bacillus thuringiensis BMB171 Bacteria Terrabacteria group Firmicutes pBMB171 NC_014172.1 CP001904 312.963 33.2701 240 - - - 268 28

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_78p NC_018879.1 CP003891 77.895 32.2858 86 - - - 86 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_15p NC_018880.1 CP003892 15.189 35.6508 14 - - - 14 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_8p NC_018881.1 CP003893 8.24 29.7451 9 - - - 9 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_7p NC_018882.1 CP003894 7.635 32.2069 9 - - - 9 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_502p NC_018878.1 CP003890 501.911 31.5183 681 - 31 - 712 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_9p NC_018886.1 CP003898 8.513 30.7882 9 - - - 9 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_2p NC_018885.1 CP003897 2.062 34.8206 3 - - - 3 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_5p NC_018884.1 CP003896 5.518 31.6238 5 - - - 5 -

Bacillus thuringiensis Bt407 Bacteria Terrabacteria group Firmicutes BTB_6p NC_018883.1 CP003895 6.88 31.7587 7 - - - 7 -

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p07 NC_018503.1 CP003759 9.07 33.495 7 - - - 7 -

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p08 NC_018490.1 CP003760 8.574 30.0676 8 - - - 9 1

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p02 NC_018501.1 CP003754 168.999 33.1724 158 - - - 161 3

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p04 NC_018488.1 CP003756 65.47 32.007 72 - - - 73 1

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p03 NC_018487.1 CP003755 69.876 34.3151 74 - - - 78 4

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p01 NC_018486.1 CP003753 171.03 32.9708 163 - - - 163 -

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p05 NC_018502.1 CP003757 45.262 36.0236 54 - 1 - 57 2

Bacillus thuringiensis HD-771 Bacteria Terrabacteria group Firmicutes p06 NC_018489.1 CP003758 14.056 35.2305 14 - - - 14 -

Bacillus thuringiensis HD-789 Bacteria Terrabacteria group Firmicutes p03 NC_018510.1 CP003766 224.872 33.0512 182 - - - 197 15

Bacillus thuringiensis HD-789 Bacteria Terrabacteria group Firmicutes p02 NC_018509.1 CP003765 235.425 36.5883 245 - 17 - 262 -

Bacillus thuringiensis HD-789 Bacteria Terrabacteria group Firmicutes p05 NC_018511.1 CP003768 7.697 35.2605 9 - - - 9 -

Bacillus thuringiensis HD-789 Bacteria Terrabacteria group Firmicutes p01 NC_018516.1 CP003764 349.599 33.3516 434 - - - 434 -

Bacillus thuringiensis HD-789 Bacteria Terrabacteria group Firmicutes p04 NC_018517.1 CP003767 14.935 39.7389 21 - - - 21 -

Bacillus thuringiensis HD-789 Bacteria Terrabacteria group Firmicutes p06 NC_018512.1 CP003769 6.824 35.9906 4 - - - 4 -

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 6 NZ_CP009345.1 CP009345 7.697 35.2605 9 - - - 9 -

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 1 NZ_CP009349.1 CP009349 359.439 32.3193 295 - - - 313 18

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 3 NZ_CP009347.1 CP009347 235.425 36.5883 245 - 17 - 262 -

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 5 NZ_CP009346.1 CP009346 14.961 39.7099 21 - - - 21 -

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 4 NZ_CP009350.1 CP009350 107.443 33.83 93 - - - 95 2

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 7 NZ_CP009344.1 CP009344 6.824 35.9906 4 - - - 4 -

Bacillus thuringiensis HD1002 Bacteria Terrabacteria group Firmicutes 2 NZ_CP009348.1 CP009348 349.602 33.3519 434 - - - 434 -

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC8 NC_018684.1 CP003688 7.826 32.1109 7 - - - 7 -

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC95 NC_018685.1 CP003690 95.433 34.0165 87 - - - 91 4

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC54 NC_018694.1 CP003689 54.484 34.7313 70 - 1 - 71 -

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC183 NC_018686.1 CP003691 183.21 32.847 192 - - - 199 7

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC189 NC_018687.1 CP003692 189.702 33.4119 135 - 1 - 159 23

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC319 NC_018688.1 CP003693 319.71 32.4763 254 - - - 268 14

Bacillus thuringiensis MC28 Bacteria Terrabacteria group Firmicutes pMC429 NC_018689.1 CP003694 429.674 32.5668 349 - - - 377 28

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT6880 NC_017210.1 CP001912 6.88 31.7587 7 - - - 7 -

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT9547 NC_017212.1 CP001917 9.547 33.0889 6 - - - 7 1

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT72 NC_017205.1 CP001913 72.074 32.0421 84 - - - 84 -

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT8513 NC_017207.1 CP001916 8.513 30.7882 9 - - - 9 -

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT127 NC_017202.1 CP001908 127.885 32.0866 125 - - - 133 8

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT14 NC_017209.1 CP001909 14.86 31.467 20 - - - 20 -

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT8252 NC_017211.1 CP001914 8.252 32.4164 10 - - - 10 -

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT83 NC_017206.1 CP001915 83.59 33.1547 86 - - - 93 7

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT281 NC_017203.1 CP001910 281.231 33.0063 234 - - - 255 21

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pCT51 NC_017204.1 CP001911 51.488 34.9674 69 - - - 70 1

Bacillus thuringiensis serovar chinensis CT-43 Bacteria Terrabacteria group Firmicutes pBMB0558 NC_014937.1 HM037272 109.464 34.8589 149 - - - 149 -

Bacillus thuringiensis serovar finitimus YBT-020 Bacteria Terrabacteria group Firmicutes pBMB26 NC_017201.1 CP002509 187.88 33.1142 171 - 1 - 184 12

Bacillus thuringiensis serovar finitimus YBT-020 Bacteria Terrabacteria group Firmicutes pBMB28 NC_017199.1 CP002510 139.013 33.8868 122 - 1 - 136 13

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB126 NZ_CP010092.1 CP010092 126.898 31.7042 128 - - - 133 5

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB55 NZ_CP010094.1 CP010094 55.46 34.89 53 - - - 54 1

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB426 NZ_CP010090.1 CP010090 426.282 32.8613 313 - 1 - 346 32

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB71 NZ_CP010093.1 CP010093 71.373 32.2251 81 - - - 83 2

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB267 NZ_CP010091.1 CP010091 267.359 33.2212 221 - - - 237 16

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB47 NZ_CP010095.1 CP010095 46.979 35.4584 66 - - - 66 -

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB8 NZ_CP010099.1 CP010099 8.423 29.5619 7 - - - 8 1

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB7 NZ_CP010098.1 CP010098 10.656 33.7275 10 - - - 11 1

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMBLin15 NZ_CP010096.1 CP010096 14.749 39.9146 22 - - - 22 -

Bacillus thuringiensis serovar galleriae 4G5 Bacteria Terrabacteria group Firmicutes pBMB12 NZ_CP010097.1 CP010097 12.866 31.5172 18 - - - 18 -

Bacillus thuringiensis serovar indiana HD521 Bacteria Terrabacteria group Firmicutes pBTHD521-6 NZ_CP010112.1 CP010112 314.883 31.9912 230 - - - 242 12

Bacillus thuringiensis serovar indiana HD521 Bacteria Terrabacteria group Firmicutes pBTHD521-5 NZ_CP010111.1 CP010111 253.58 33.0834 199 - - - 217 18

Bacillus thuringiensis serovar indiana HD521 Bacteria Terrabacteria group Firmicutes pBTHD521-4 NZ_CP010110.1 CP010110 71.646 29.7853 87 - - - 88 1

Bacillus thuringiensis serovar indiana HD521 Bacteria Terrabacteria group Firmicutes pBTHD521-3 NZ_CP010109.1 CP010109 71.771 34.3718 77 - - - 78 1

Bacillus thuringiensis serovar indiana HD521 Bacteria Terrabacteria group Firmicutes pBTHD521-2 NZ_CP010108.1 CP010108 49.838 35.9083 64 - - - 64 -

Bacillus thuringiensis serovar indiana HD521 Bacteria Terrabacteria group Firmicutes pBTHD521-1 NZ_CP010107.1 CP010107 7.042 29.4519 10 - - - 10 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed5 NZ_CP010002.1 CP010002 80.285 33.4633 79 - - - 81 2

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed6 NZ_CP010003.1 CP010003 69.317 35.1472 59 - - - 63 4

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed2 NZ_CP009999.1 CP009999 317.336 33.1655 258 - - - 279 21

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed7 NZ_CP010006.1 CP010006 46.634 35.4355 66 - - - 66 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed12 NZ_CP010007.1 CP010007 8.513 30.7882 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed14 NZ_CP010008.1 CP010008 2.062 34.8206 3 - - - 3 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed10 NZ_CP010010.1 CP010010 14.889 31.1035 18 - - - 18 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed9 NZ_CP010012.1 CP010012 18.332 38.2773 22 - - - 22 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed1 NZ_CP009998.1 CP009998 412.022 32.6121 304 - 1 - 326 21

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed8 NZ_CP010004.1 CP010004 34.15 31.2914 18 - - - 22 4

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed3 NZ_CP010000.1 CP010000 82.528 30.9858 90 - - - 93 3

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed4 NZ_CP010001.1 CP010001 82.303 32.1847 83 - - - 88 5

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed11 NZ_CP010009.1 CP010009 8.279 29.762 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki HD 1i Bacteria Terrabacteria group Firmicutes unnamed13 NZ_CP010011.1 CP010011 7.635 32.2069 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB299 NZ_CP004876.1 CP004876 299.843 33.2407 223 - - - 268 45

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB2062 NZ_CP004878.1 CP004878 2.062 34.8206 3 - - - 3 -

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB46 NZ_CP004871.1 CP004871 46.634 35.4355 66 - - - 66 -

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB64 NZ_CP004872.1 CP004872 64.522 31.8651 69 - - - 72 3

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB95 NZ_CP004875.1 CP004875 95.983 31.4681 97 - - - 102 5

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB7635 NZ_CP004879.1 CP004879 7.635 32.2069 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB431 NZ_CP004877.1 CP004877 431.546 32.6549 317 - 1 - 342 24

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB65 NZ_CP004873.1 CP004873 65.873 34.7806 57 - - - 59 2

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB74 NZ_CP004874.1 CP004874 74.48 33.7044 75 - - - 79 4

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMBLin15 NZ_CP004882.1 CP004882 14.87 40.1076 21 - - - 21 -

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB8513 NZ_CP004881.1 CP004881 8.513 30.9174 8 - - - 9 1

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB8240 NZ_CP004880.1 CP004880 8.24 29.733 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. HD-1 Bacteria Terrabacteria group Firmicutes pBMB14 NZ_CP004883.1 CP004883 14.721 31.0033 18 - - - 18 -

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pHT8_2 NC_020242.1 CP004075 8.241 29.7294 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pHT11 NC_020250.1 CP004073 11.769 31.8124 18 - - - 18 -

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pAW63 NC_020240.1 CP004072 71.777 33.7643 72 - - - 77 5

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pHT77 NC_020239.1 CP004071 76.49 30.7779 85 - - - 87 2

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pHT8_1 NC_020241.1 CP004074 8.513 30.7882 9 - - - 10 1

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pHT73 NC_020249.1 CP004070 77.351 34.6589 64 - - - 68 4

Bacillus thuringiensis serovar kurstaki str. HD73 Bacteria Terrabacteria group Firmicutes pHT7 NC_020243.1 CP004076 7.635 32.2069 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB2062 NZ_CP004859.1 CP004859 2.062 34.8206 3 - - - 3 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB8513 NZ_CP004864.1 CP004864 8.513 30.7882 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB7921 NZ_CP004866.1 CP004866 7.921 32.3318 10 - - - 11 1

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB94 NZ_CP004868.1 CP004868 94.568 31.4483 91 - - - 96 5

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB67 NZ_CP004869.1 CP004869 67.159 32.4335 75 - - - 77 2

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB8240 NZ_CP004865.1 CP004865 8.24 29.733 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB7635 NZ_CP004867.1 CP004867 7.635 32.2069 9 - - - 9 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB53 NZ_CP004862.1 CP004862 53.838 34.4311 51 - - - 51 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB293 NZ_CP004861.1 CP004861 293.574 33.1702 242 - - - 263 21

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB11 NZ_CP004863.1 CP004863 11.769 31.7869 18 - - - 18 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB422 NZ_CP004860.1 CP004860 422.692 32.5802 314 - 1 - 335 20

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB2062 NZ_CP007608.1 CP007608 2.062 34.8206 - - - - - -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB293 NZ_CP007615.1 CP007615 293.574 33.1702 242 - - - 263 21

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB400 NZ_CP007616.1 CP007616 416.21 32.5232 312 - 1 - 331 18

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB95 NZ_CP007614.1 CP007614 94.637 31.4655 91 - - - 96 5

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB7921 NZ_CP007609.1 CP007609 7.921 32.3318 10 - - - 11 1

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB11 NZ_CP007612.1 CP007612 12.003 31.8337 17 - - - 18 1

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB8513 NZ_CP007611.1 CP007611 8.513 30.7882 10 - - - 10 -

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB69 NZ_CP007613.1 CP007613 69.416 34.3163 56 - - - 60 4

Bacillus thuringiensis serovar kurstaki str. YBT-1520 Bacteria Terrabacteria group Firmicutes pBMB8240 NZ_CP007610.1 CP007610 8.24 29.733 9 - - - 9 -

Bacillus thuringiensis serovar morrisoni serovar morrisoni BGSC 4AA1 Bacteria Terrabacteria group Firmicutes pBMB232 NZ_CP010578.1 CP010578 232.994 33.706 183 - - - 207 24